Analysis of interatomic Contacts of Structural Units in PDB entry:
5JX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JX5 entry

There are 4 chains in PDB entry 5JX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 128PHE 449
B
 THR 128PHE 449
C
 THR 128PHE 449
D
 THR 128PHE 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5JX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 152Right-handed alpha
Helix 2
AA2
A
156 166Right-handed alpha
Helix 3
AA3
A
176 181Right-handed 310
Helix 4
AA4
A
182 191Right-handed alpha
Helix 5
AA5
A
217 235Right-handed alpha
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
261 280Right-handed alpha
Helix 8
AA8
A
293 298Right-handed alpha
Helix 9
AA9
A
300 314Right-handed alpha
Helix 10
AB1
A
332 350Right-handed alpha
Helix 11
AB2
A
415 420Right-handed 310
Helix 12
AB3
A
434 444Right-handed alpha
Helix 13
AB4
B
131 135Right-handed 310
Helix 14
AB5
B
140 152Right-handed alpha
Helix 15
AB6
B
155 166Right-handed alpha
Helix 16
AB7
B
176 181Right-handed 310
Helix 17
AB8
B
182 191Right-handed alpha
Helix 18
AB9
B
217 235Right-handed alpha
Helix 19
AC1
B
248 256Right-handed alpha
Helix 20
AC2
B
261 280Right-handed alpha
Helix 21
AC3
B
293 298Right-handed alpha
Helix 22
AC4
B
300 314Right-handed alpha
Helix 23
AC5
B
332 350Right-handed alpha
Helix 24
AC6
B
411 420Right-handed 310
Helix 25
AC7
B
434 444Right-handed alpha
Helix 26
AC8
C
140 152Right-handed alpha
Helix 27
AC9
C
155 166Right-handed alpha
Helix 28
AD1
C
176 181Right-handed 310
Helix 29
AD2
C
182 191Right-handed alpha
Helix 30
AD3
C
217 235Right-handed alpha
Helix 31
AD4
C
249 256Right-handed alpha
Helix 32
AD5
C
261 280Right-handed alpha
Helix 33
AD6
C
293 298Right-handed alpha
Helix 34
AD7
C
300 314Right-handed alpha
Helix 35
AD8
C
332 350Right-handed alpha
Helix 36
AD9
C
415 420Right-handed 310
Helix 37
AE1
C
434 444Right-handed alpha
Helix 38
AE2
D
131 135Right-handed 310
Helix 39
AE3
D
140 152Right-handed alpha
Helix 40
AE4
D
155 166Right-handed alpha
Helix 41
AE5
D
176 181Right-handed 310
Helix 42
AE6
D
182 191Right-handed alpha
Helix 43
AE7
D
217 235Right-handed alpha
Helix 44
AE8
D
249 256Right-handed alpha
Helix 45
AE9
D
258 260Right-handed 310
Helix 46
AF1
D
261 280Right-handed alpha
Helix 47
AF2
D
293 298Right-handed alpha
Helix 48
AF3
D
300 314Right-handed alpha
Helix 49
AF4
D
332 349Right-handed alpha
Helix 50
AF5
D
415 420Right-handed 310
Helix 51
AF6
D
434 444Right-handed alpha
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There are 4 sheets in PDB entry 5JX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
195 199parallel
Strand 3
A
241 245parallel
Strand 4
A
285 290parallel
Strand 5
A
322 325parallel
Strand 6
A
356 360parallel
Strand 7
A
396 400parallel
Strand 8
A
386 387anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
195 199parallel
Strand 3
B
241 245parallel
Strand 4
B
285 290parallel
Strand 5
B
322 325parallel
Strand 6
B
356 360parallel
Strand 7
B
396 400parallel
Strand 8
B
386 387anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
195 199parallel
Strand 3
C
241 245parallel
Strand 4
C
285 290parallel
Strand 5
C
322 325parallel
Strand 6
C
356 360parallel
Strand 7
C
396 400parallel
Strand 8
C
386 387anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 174first strand
Strand 2
D
194 199parallel
Strand 3
D
240 245parallel
Strand 4
D
285 290parallel
Strand 5
D
322 325parallel
Strand 6
D
356 360parallel
Strand 7
D
396 400parallel
Strand 8
D
386 387anti-parallel
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