Analysis of interatomic Contacts of Structural Units in PDB entry:
5JXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JXB entry

There are 2 chains in PDB entry 5JXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 305VAL 426
C
 GLU 304VAL 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5JXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
368 379Right-handed alpha
Helix 2
AA2
A
390 409Right-handed alpha
Helix 3
AA3
C
328 331Right-handed 310
Helix 4
AA4
C
342 348Right-handed alpha
Helix 5
AA5
C
368 379Right-handed alpha
Helix 6
AA6
C
390 409Right-handed alpha
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There are 4 sheets in PDB entry 5JXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 314first strand
Strand 2
A
382 389anti-parallel
Strand 3
A
354 359anti-parallel
Strand 4
A
362 363anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 338first strand
Strand 2
A
322 325anti-parallel
Strand 3
A
423 425anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 314first strand
Strand 2
C
382 389anti-parallel
Strand 3
C
354 359anti-parallel
Strand 4
C
362 363anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 335first strand
Strand 2
C
323 326anti-parallel
Strand 3
C
424 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il