Analysis of interatomic Contacts of Structural Units in PDB entry:
5JXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JXF entry

There are 2 chains in PDB entry 5JXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 16	LYS 712
B	GLN 18	TYR 590

There are129 helices in PDB entry 5JXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	30	40	Right-handed alpha
Helix 3	AA3	A	44	49	Right-handed alpha
Helix 4	AA4	A	55	60	Right-handed 310
Helix 5	AA5	A	81	92	Right-handed alpha
Helix 6	AA6	A	98	103	Right-handed alpha
Helix 7	AA7	A	108	112	Right-handed 310
Helix 8	AA8	A	129	134	Right-handed alpha
Helix 9	AA9	A	143	161	Right-handed alpha
Helix 10	AB1	A	175	178	Right-handed 310
Helix 11	AB2	A	198	203	Right-handed alpha
Helix 12	AB3	A	205	210	Right-handed alpha
Helix 13	AB4	A	276	286	Right-handed alpha
Helix 14	AB5	A	286	308	Right-handed alpha
Helix 15	AB6	A	309	340	Right-handed alpha
Helix 16	AB7	A	341	358	Right-handed alpha
Helix 17	AB8	A	367	394	Right-handed alpha
Helix 18	AB9	A	398	418	Right-handed alpha
Helix 19	AC1	A	418	433	Right-handed alpha
Helix 20	AC2	A	433	439	Right-handed alpha
Helix 21	AC3	A	441	460	Right-handed alpha
Helix 22	AC4	A	461	465	Right-handed 310
Helix 23	AC5	A	489	497	Right-handed alpha
Helix 24	AC6	A	500	511	Right-handed alpha
Helix 25	AC7	A	511	528	Right-handed alpha
Helix 26	AC8	A	528	554	Right-handed alpha
Helix 27	AC9	A	591	598	Right-handed alpha
Helix 28	AD1	A	608	618	Right-handed alpha
Helix 29	AD2	A	620	624	Right-handed 310
Helix 30	AD3	A	664	667	Right-handed 310
Helix 31	AD4	A	685	694	Right-handed alpha
Helix 32	AD5	A	698	704	Right-handed alpha
Helix 33	AD6	B	24	28	Right-handed 310
Helix 34	AD7	B	30	39	Right-handed alpha
Helix 35	AD8	B	44	49	Right-handed alpha
Helix 36	AD9	B	55	60	Right-handed 310
Helix 37	AE1	B	81	92	Right-handed alpha
Helix 38	AE2	B	98	103	Right-handed alpha
Helix 39	AE3	B	108	112	Right-handed 310
Helix 40	AE4	B	129	134	Right-handed alpha
Helix 41	AE5	B	142	161	Right-handed alpha
Helix 42	AE6	B	175	178	Right-handed 310
Helix 43	AE7	B	198	203	Right-handed alpha
Helix 44	AE8	B	276	286	Right-handed alpha
Helix 45	AE9	B	286	309	Right-handed alpha
Helix 46	AF1	B	309	340	Right-handed alpha
Helix 47	AF2	B	341	360	Right-handed alpha
Helix 48	AF3	B	362	367	Right-handed alpha
Helix 49	AF4	B	368	394	Right-handed alpha
Helix 50	AF5	B	398	418	Right-handed alpha
Helix 51	AF6	B	418	433	Right-handed alpha
Helix 52	AF7	B	433	440	Right-handed alpha
Helix 53	AF8	B	441	460	Right-handed alpha
Helix 54	AF9	B	461	465	Right-handed 310
Helix 55	AG1	B	477	485	Right-handed alpha
Helix 56	AG2	B	489	497	Right-handed alpha
Helix 57	AG3	B	500	511	Right-handed alpha
Helix 58	AG4	B	511	528	Right-handed alpha
Helix 59	AG5	B	528	554	Right-handed alpha
Helix 60	AG6	B	591	598	Right-handed alpha
Helix 61	AG7	B	608	617	Right-handed alpha
Helix 62	AG8	B	620	624	Right-handed 310
Helix 63	AG9	B	664	667	Right-handed 310
Helix 64	AH1	B	685	694	Right-handed alpha
Helix 65	AH2	B	698	705	Right-handed alpha
Helix 66	AH3	C	24	28	Right-handed 310
Helix 67	AH4	C	30	39	Right-handed alpha
Helix 68	AH5	C	44	49	Right-handed alpha
Helix 69	AH6	C	55	60	Right-handed 310
Helix 70	AH7	C	81	93	Right-handed alpha
Helix 71	AH8	C	98	103	Right-handed alpha
Helix 72	AH9	C	108	112	Right-handed 310
Helix 73	AI1	C	129	134	Right-handed alpha
Helix 74	AI2	C	146	161	Right-handed alpha
Helix 75	AI3	C	175	178	Right-handed 310
Helix 76	AI4	C	198	203	Right-handed alpha
Helix 77	AI5	C	276	286	Right-handed alpha
Helix 78	AI6	C	286	309	Right-handed alpha
Helix 79	AI7	C	309	340	Right-handed alpha
Helix 80	AI8	C	341	361	Right-handed alpha
Helix 81	AI9	C	362	367	Right-handed alpha
Helix 82	AJ1	C	368	394	Right-handed alpha
Helix 83	AJ2	C	398	414	Right-handed alpha
Helix 84	AJ3	C	422	427	Right-handed alpha
Helix 85	AJ4	C	432	436	Right-handed 310
Helix 86	AJ5	C	441	460	Right-handed alpha
Helix 87	AJ6	C	461	465	Right-handed 310
Helix 88	AJ7	C	477	485	Right-handed alpha
Helix 89	AJ8	C	504	509	Right-handed alpha
Helix 90	AJ9	C	511	528	Right-handed alpha
Helix 91	AK1	C	528	554	Right-handed alpha
Helix 92	AK2	C	591	598	Right-handed alpha
Helix 93	AK3	C	608	617	Right-handed alpha
Helix 94	AK4	C	620	624	Right-handed 310
Helix 95	AK5	C	664	667	Right-handed 310
Helix 96	AK6	C	685	694	Right-handed alpha
Helix 97	AK7	C	698	705	Right-handed alpha
Helix 98	AK8	D	30	39	Right-handed alpha
Helix 99	AK9	D	44	49	Right-handed alpha
Helix 100	AL1	D	55	60	Right-handed 310
Helix 101	AL2	D	81	92	Right-handed alpha
Helix 102	AL3	D	98	103	Right-handed alpha
Helix 103	AL4	D	108	112	Right-handed 310
Helix 104	AL5	D	129	134	Right-handed alpha
Helix 105	AL6	D	149	161	Right-handed alpha
Helix 106	AL7	D	175	178	Right-handed 310
Helix 107	AL8	D	198	203	Right-handed alpha
Helix 108	AL9	D	276	286	Right-handed alpha
Helix 109	AM1	D	286	306	Right-handed alpha
Helix 110	AM2	D	309	316	Right-handed alpha
Helix 111	AM3	D	316	341	Right-handed alpha
Helix 112	AM4	D	341	361	Right-handed alpha
Helix 113	AM5	D	362	367	Right-handed alpha
Helix 114	AM6	D	368	394	Right-handed alpha
Helix 115	AM7	D	398	410	Right-handed alpha
Helix 116	AM8	D	411	414	Right-handed 310
Helix 117	AM9	D	421	431	Right-handed alpha
Helix 118	AN1	D	433	438	Right-handed alpha
Helix 119	AN2	D	441	459	Right-handed alpha
Helix 120	AN3	D	490	498	Right-handed alpha
Helix 121	AN4	D	503	509	Right-handed alpha
Helix 122	AN5	D	511	528	Right-handed alpha
Helix 123	AN6	D	528	554	Right-handed alpha
Helix 124	AN7	D	591	598	Right-handed alpha
Helix 125	AN8	D	608	617	Right-handed alpha
Helix 126	AN9	D	620	624	Right-handed 310
Helix 127	AO1	D	664	667	Right-handed 310
Helix 128	AO2	D	685	694	Right-handed alpha
Helix 129	AO3	D	698	704	Right-handed alpha

There are 23 sheets in PDB entry 5JXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	62	63	anti-parallel
Strand 3	A	120	128	anti-parallel
Strand 4	A	179	188	anti-parallel
Strand 5	A	168	174	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	221	227	anti-parallel
Strand 4	A	190	196	anti-parallel
Strand 5	A	104	105	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	221	227	anti-parallel
Strand 4	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	707	708	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	573	first strand
Strand 2	A	261	266	anti-parallel
Strand 3	A	647	649	anti-parallel
Strand 4	A	655	662	anti-parallel
Strand 5	A	680	684	anti-parallel
Strand 6	A	630	635	anti-parallel
Strand 7	A	588	590	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	583	585	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	62	63	anti-parallel
Strand 3	B	120	128	anti-parallel
Strand 4	B	179	188	anti-parallel
Strand 5	B	168	174	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	77	80	anti-parallel
Strand 3	B	221	227	anti-parallel
Strand 4	B	190	196	anti-parallel
Strand 5	B	104	105	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	77	80	anti-parallel
Strand 3	B	221	227	anti-parallel
Strand 4	B	241	242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	707	708	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	573	first strand
Strand 2	B	261	266	anti-parallel
Strand 3	B	647	649	anti-parallel
Strand 4	B	655	662	anti-parallel
Strand 5	B	680	684	anti-parallel
Strand 6	B	630	635	anti-parallel
Strand 7	B	588	590	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	583	585	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	62	63	anti-parallel
Strand 3	C	120	128	anti-parallel
Strand 4	C	179	188	anti-parallel
Strand 5	C	168	174	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	77	80	anti-parallel
Strand 3	C	221	227	anti-parallel
Strand 4	C	191	196	anti-parallel
Strand 5	C	113	114	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	221	227	anti-parallel
Strand 4	C	241	242	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	707	708	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	573	first strand
Strand 2	C	261	266	anti-parallel
Strand 3	C	647	649	anti-parallel
Strand 4	C	655	662	anti-parallel
Strand 5	C	680	684	anti-parallel
Strand 6	C	630	635	anti-parallel
Strand 7	C	588	590	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	62	63	anti-parallel
Strand 3	D	120	128	anti-parallel
Strand 4	D	179	188	anti-parallel
Strand 5	D	168	174	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	77	80	anti-parallel
Strand 3	D	221	227	anti-parallel
Strand 4	D	190	196	anti-parallel
Strand 5	D	104	105	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	77	80	anti-parallel
Strand 3	D	221	227	anti-parallel
Strand 4	D	241	242	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	707	708	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	568	573	first strand
Strand 2	D	261	266	anti-parallel
Strand 3	D	647	649	anti-parallel
Strand 4	D	655	662	anti-parallel
Strand 5	D	680	684	anti-parallel
Strand 6	D	630	635	anti-parallel
Strand 7	D	588	590	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	577	580	first strand
Strand 2	D	583	585	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JXF