Analysis of interatomic Contacts of Structural Units in PDB entry:
5JXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JXP entry

There is 1 chain in PDB entry 5JXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21PHE 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5JXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
46 51Right-handed alpha
Helix 4
AA4
A
57 60Right-handed 310
Helix 5
AA5
A
87 94Right-handed alpha
Helix 6
AA6
A
100 105Right-handed alpha
Helix 7
AA7
A
110 114Right-handed 310
Helix 8
AA8
A
131 140Right-handed alpha
Helix 9
AA9
A
152 158Right-handed alpha
Helix 10
AB1
A
159 164Right-handed alpha
Helix 11
AB2
A
205 210Right-handed alpha
Helix 12
AB3
A
283 293Right-handed alpha
Helix 13
AB4
A
293 311Right-handed alpha
Helix 14
AB5
A
348 365Right-handed alpha
Helix 15
AB6
A
370 386Right-handed alpha
Helix 16
AB7
A
386 400Right-handed alpha
Helix 17
AB8
A
404 409Right-handed 310
Helix 18
AB9
A
413 418Right-handed alpha
Helix 19
AC1
A
422 439Right-handed alpha
Helix 20
AC2
A
450 466Right-handed alpha
Helix 21
AC3
A
467 471Right-handed 310
Helix 22
AC4
A
472 483Right-handed alpha
Helix 23
AC5
A
484 496Right-handed alpha
Helix 24
AC6
A
500 508Right-handed alpha
Helix 25
AC7
A
512 517Right-handed alpha
Helix 26
AC8
A
519 562Right-handed alpha
Helix 27
AC9
A
563 566Right-handed 310
Helix 28
AD1
A
598 604Right-handed alpha
Helix 29
AD2
A
609 613Right-handed 310
Helix 30
AD3
A
615 625Right-handed alpha
Helix 31
AD4
A
627 631Right-handed 310
Helix 32
AD5
A
675 680Right-handed alpha
Helix 33
AD6
A
693 702Right-handed alpha
Helix 34
AD7
A
706 714Right-handed alpha
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There are 4 sheets in PDB entry 5JXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
575 580anti-parallel
Strand 3
A
268 273anti-parallel
Strand 4
A
655 657anti-parallel
Strand 5
A
663 670anti-parallel
Strand 6
A
688 692anti-parallel
Strand 7
A
638 643anti-parallel
Strand 8
A
595 597anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
79 82anti-parallel
Strand 5
A
69 73anti-parallel
Strand 6
A
62 65anti-parallel
Strand 7
A
122 130anti-parallel
Strand 8
A
186 195anti-parallel
Strand 9
A
174 181anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
248 249anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 587first strand
Strand 2
A
590 592anti-parallel
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