Analysis of interatomic Contacts of Structural Units in PDB entry:
5JXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JXU entry

There are 2 chains in PDB entry 5JXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 44GLY 403
B
 THR 44GLY 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5JXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 99Right-handed alpha
Helix 2
AA2
A
109 113Right-handed 310
Helix 3
AA3
A
126 134Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
155 159Right-handed 310
Helix 6
AA6
A
171 187Right-handed alpha
Helix 7
AA7
A
229 237Right-handed alpha
Helix 8
AA8
A
242 246Right-handed 310
Helix 9
AA9
A
259 266Right-handed alpha
Helix 10
AB1
A
267 276Right-handed alpha
Helix 11
AB2
A
311 317Right-handed alpha
Helix 12
AB3
A
320 324Right-handed 310
Helix 13
AB4
A
354 359Right-handed alpha
Helix 14
AB5
A
359 369Right-handed alpha
Helix 15
AB6
A
371 375Right-handed 310
Helix 16
AB7
A
398 403Right-handed alpha
Helix 17
AB8
B
80 99Right-handed alpha
Helix 18
AB9
B
109 113Right-handed 310
Helix 19
AC1
B
126 134Right-handed alpha
Helix 20
AC2
B
155 159Right-handed 310
Helix 21
AC3
B
171 187Right-handed alpha
Helix 22
AC4
B
229 237Right-handed alpha
Helix 23
AC5
B
242 246Right-handed 310
Helix 24
AC6
B
259 265Right-handed alpha
Helix 25
AC7
B
267 276Right-handed alpha
Helix 26
AC8
B
311 317Right-handed alpha
Helix 27
AC9
B
320 324Right-handed 310
Helix 28
AD1
B
354 359Right-handed alpha
Helix 29
AD2
B
359 369Right-handed alpha
Helix 30
AD3
B
371 375Right-handed 310
Helix 31
AD4
B
398 403Right-handed alpha
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There are 8 sheets in PDB entry 5JXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
190 199anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
219 220anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
342 352anti-parallel
Strand 3
A
330 336anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
342 352anti-parallel
Strand 3
A
249 258anti-parallel
Strand 4
A
377 387anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
163 169anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
190 199anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
219 220anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
342 352anti-parallel
Strand 3
B
330 336anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
342 352anti-parallel
Strand 3
B
249 258anti-parallel
Strand 4
B
377 387anti-parallel
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