Analysis of interatomic Contacts of Structural Units in PDB entry:
5JXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JXX entry

There are 6 chains in PDB entry 5JXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 257
B
 MET 1VAL 256
C
 MET 1ARG 257
D
 MET 1ARG 257
E
 MET 1VAL 256
F
 MET 1VAL 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5JXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
193 200Right-handed alpha
Helix 2
AA2
A
203 218Right-handed alpha
Helix 3
AA3
A
223 235Right-handed alpha
Helix 4
AA4
A
240 250Right-handed alpha
Helix 5
AA5
B
193 200Right-handed alpha
Helix 6
AA6
B
203 219Right-handed alpha
Helix 7
AA7
B
223 235Right-handed alpha
Helix 8
AA8
B
236 239Right-handed 310
Helix 9
AA9
B
240 250Right-handed alpha
Helix 10
AB1
C
97 101Right-handed 310
Helix 11
AB2
C
193 200Right-handed alpha
Helix 12
AB3
C
203 218Right-handed alpha
Helix 13
AB4
C
223 235Right-handed alpha
Helix 14
AB5
C
240 250Right-handed alpha
Helix 15
AB6
D
193 200Right-handed alpha
Helix 16
AB7
D
203 219Right-handed alpha
Helix 17
AB8
D
223 238Right-handed alpha
Helix 18
AB9
D
240 250Right-handed alpha
Helix 19
AC1
E
193 201Right-handed alpha
Helix 20
AC2
E
203 218Right-handed alpha
Helix 21
AC3
E
223 231Right-handed alpha
Helix 22
AC4
E
233 238Right-handed alpha
Helix 23
AC5
E
240 250Right-handed alpha
Helix 24
AC6
F
97 101Right-handed 310
Helix 25
AC7
F
193 201Right-handed alpha
Helix 26
AC8
F
203 218Right-handed alpha
Helix 27
AC9
F
223 235Right-handed alpha
Helix 28
AD1
F
240 250Right-handed alpha
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There are 18 sheets in PDB entry 5JXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
26 27parallel
Strand 3
A
44 45parallel
Strand 4
A
62 65parallel
Strand 5
A
92 94parallel
Strand 6
A
117 118parallel
Strand 7
A
135 136parallel
Strand 8
A
153 154parallel
Strand 9
A
171 172parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
32 33parallel
Strand 3
A
49 51parallel
Strand 4
A
78 81parallel
Strand 5
A
103 106parallel
Strand 6
A
123 124parallel
Strand 7
A
141 142parallel
Strand 8
A
159 160parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
38 39parallel
Strand 3
A
56 57parallel
Strand 4
A
86 87parallel
Strand 5
A
111 112parallel
Strand 6
A
129 130parallel
Strand 7
A
147 148parallel
Strand 8
A
165 166parallel
Strand 9
A
180 183parallel
Strand 10
A
188 192anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
26 27parallel
Strand 3
B
44 45parallel
Strand 4
B
62 65parallel
Strand 5
B
92 94parallel
Strand 6
B
117 118parallel
Strand 7
B
135 136parallel
Strand 8
B
153 154parallel
Strand 9
B
171 172parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
32 33parallel
Strand 3
B
49 51parallel
Strand 4
B
78 81parallel
Strand 5
B
103 106parallel
Strand 6
B
123 124parallel
Strand 7
B
141 142parallel
Strand 8
B
159 160parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
38 39parallel
Strand 3
B
56 57parallel
Strand 4
B
86 87parallel
Strand 5
B
111 112parallel
Strand 6
B
129 130parallel
Strand 7
B
147 148parallel
Strand 8
B
165 166parallel
Strand 9
B
180 183parallel
Strand 10
B
188 192anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
26 27parallel
Strand 3
C
44 45parallel
Strand 4
C
62 65parallel
Strand 5
C
92 94parallel
Strand 6
C
117 118parallel
Strand 7
C
135 136parallel
Strand 8
C
153 154parallel
Strand 9
C
171 172parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
32 33parallel
Strand 3
C
49 51parallel
Strand 4
C
78 81parallel
Strand 5
C
103 106parallel
Strand 6
C
123 124parallel
Strand 7
C
141 142parallel
Strand 8
C
159 160parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 21first strand
Strand 2
C
38 39parallel
Strand 3
C
56 57parallel
Strand 4
C
86 87parallel
Strand 5
C
111 112parallel
Strand 6
C
129 130parallel
Strand 7
C
147 148parallel
Strand 8
C
165 166parallel
Strand 9
C
180 183parallel
Strand 10
C
188 192anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 9first strand
Strand 2
D
26 27parallel
Strand 3
D
44 45parallel
Strand 4
D
62 65parallel
Strand 5
D
92 94parallel
Strand 6
D
117 118parallel
Strand 7
D
135 136parallel
Strand 8
D
153 154parallel
Strand 9
D
171 172parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
D
32 33parallel
Strand 3
D
49 51parallel
Strand 4
D
78 81parallel
Strand 5
D
103 106parallel
Strand 6
D
123 124parallel
Strand 7
D
141 142parallel
Strand 8
D
159 160parallel
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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
38 39parallel
Strand 3
D
56 57parallel
Strand 4
D
86 87parallel
Strand 5
D
111 112parallel
Strand 6
D
129 130parallel
Strand 7
D
147 148parallel
Strand 8
D
165 166parallel
Strand 9
D
180 183parallel
Strand 10
D
188 192anti-parallel
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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 9first strand
Strand 2
E
26 27parallel
Strand 3
E
44 45parallel
Strand 4
E
62 65parallel
Strand 5
E
92 94parallel
Strand 6
E
117 118parallel
Strand 7
E
135 136parallel
Strand 8
E
153 154parallel
Strand 9
E
171 172parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 15first strand
Strand 2
E
32 33parallel
Strand 3
E
49 51parallel
Strand 4
E
78 81parallel
Strand 5
E
103 106parallel
Strand 6
E
123 124parallel
Strand 7
E
141 142parallel
Strand 8
E
159 160parallel
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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
38 39parallel
Strand 3
E
56 57parallel
Strand 4
E
86 87parallel
Strand 5
E
111 112parallel
Strand 6
E
129 130parallel
Strand 7
E
147 148parallel
Strand 8
E
165 166parallel
Strand 9
E
180 183parallel
Strand 10
E
188 192anti-parallel
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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 9first strand
Strand 2
F
26 27parallel
Strand 3
F
44 45parallel
Strand 4
F
62 65parallel
Strand 5
F
92 94parallel
Strand 6
F
117 118parallel
Strand 7
F
135 136parallel
Strand 8
F
153 154parallel
Strand 9
F
171 172parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 15first strand
Strand 2
F
32 33parallel
Strand 3
F
49 51parallel
Strand 4
F
78 81parallel
Strand 5
F
103 106parallel
Strand 6
F
123 124parallel
Strand 7
F
141 142parallel
Strand 8
F
159 160parallel
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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
20 21first strand
Strand 2
F
38 39parallel
Strand 3
F
56 57parallel
Strand 4
F
86 87parallel
Strand 5
F
111 112parallel
Strand 6
F
129 130parallel
Strand 7
F
147 148parallel
Strand 8
F
165 166parallel
Strand 9
F
180 183parallel
Strand 10
F
188 192anti-parallel
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