Analysis of interatomic Contacts of Structural Units in PDB entry:
5JY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JY0 entry

There are 2 chains in PDB entry 5JY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 22PHE 717
B
 LEU 1VAL 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5JY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
57 60Right-handed 310
Helix 4
AA4
A
87 95Right-handed alpha
Helix 5
AA5
A
100 105Right-handed alpha
Helix 6
AA6
A
131 140Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
160 165Right-handed alpha
Helix 9
AA9
A
166 168Right-handed 310
Helix 10
AB1
A
182 185Right-handed 310
Helix 11
AB2
A
205 210Right-handed alpha
Helix 12
AB3
A
283 293Right-handed alpha
Helix 13
AB4
A
293 309Right-handed alpha
Helix 14
AB5
A
320 323Right-handed 310
Helix 15
AB6
A
324 347Right-handed alpha
Helix 16
AB7
A
348 367Right-handed alpha
Helix 17
AB8
A
370 386Right-handed alpha
Helix 18
AB9
A
386 400Right-handed alpha
Helix 19
AC1
A
404 409Right-handed 310
Helix 20
AC2
A
413 419Right-handed alpha
Helix 21
AC3
A
422 441Right-handed alpha
Helix 22
AC4
A
452 466Right-handed alpha
Helix 23
AC5
A
467 471Right-handed 310
Helix 24
AC6
A
472 483Right-handed alpha
Helix 25
AC7
A
484 496Right-handed alpha
Helix 26
AC8
A
500 510Right-handed alpha
Helix 27
AC9
A
512 518Right-handed alpha
Helix 28
AD1
A
519 539Right-handed alpha
Helix 29
AD2
A
539 561Right-handed alpha
Helix 30
AD3
A
562 566Right-handed 310
Helix 31
AD4
A
598 605Right-handed alpha
Helix 32
AD5
A
615 623Right-handed alpha
Helix 33
AD6
A
672 679Right-handed 310
Helix 34
AD7
A
693 702Right-handed alpha
Helix 35
AD8
A
706 714Right-handed alpha
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There are 3 sheets in PDB entry 5JY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
575 580anti-parallel
Strand 3
A
268 273anti-parallel
Strand 4
A
655 657anti-parallel
Strand 5
A
663 670anti-parallel
Strand 6
A
688 692anti-parallel
Strand 7
A
638 643anti-parallel
Strand 8
A
595 597anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
79 82anti-parallel
Strand 5
A
69 73anti-parallel
Strand 6
A
62 65anti-parallel
Strand 7
A
122 125anti-parallel
Strand 8
A
186 195anti-parallel
Strand 9
A
174 181anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
186 195anti-parallel
Strand 3
A
122 125anti-parallel
Strand 4
A
62 65anti-parallel
Strand 5
A
69 73anti-parallel
Strand 6
A
79 82anti-parallel
Strand 7
A
228 234anti-parallel
Strand 8
A
248 249anti-parallel
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