Analysis of interatomic Contacts of Structural Units in PDB entry:
5JY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JY1 entry

There are 4 chains in PDB entry 5JY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 266
B
 MET 1TYR 266
C
 MET 1TYR 266
D
 MET 1TYR 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5JY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 115Right-handed alpha
Helix 6
AA6
A
115 134Right-handed alpha
Helix 7
AA7
A
144 149Right-handed alpha
Helix 8
AA8
A
153 175Right-handed alpha
Helix 9
AA9
A
190 200Right-handed alpha
Helix 10
AB1
A
202 210Right-handed alpha
Helix 11
AB2
A
218 223Right-handed alpha
Helix 12
AB3
A
223 232Right-handed alpha
Helix 13
AB4
A
233 236Right-handed 310
Helix 14
AB5
B
16 29Right-handed alpha
Helix 15
AB6
B
39 53Right-handed alpha
Helix 16
AB7
B
66 82Right-handed alpha
Helix 17
AB8
B
99 103Right-handed 310
Helix 18
AB9
B
104 115Right-handed alpha
Helix 19
AC1
B
115 134Right-handed alpha
Helix 20
AC2
B
144 149Right-handed alpha
Helix 21
AC3
B
153 175Right-handed alpha
Helix 22
AC4
B
190 200Right-handed alpha
Helix 23
AC5
B
202 210Right-handed alpha
Helix 24
AC6
B
218 223Right-handed alpha
Helix 25
AC7
B
223 231Right-handed alpha
Helix 26
AC8
B
232 236Right-handed 310
Helix 27
AC9
C
16 29Right-handed alpha
Helix 28
AD1
C
39 53Right-handed alpha
Helix 29
AD2
C
66 82Right-handed alpha
Helix 30
AD3
C
99 103Right-handed 310
Helix 31
AD4
C
104 115Right-handed alpha
Helix 32
AD5
C
115 134Right-handed alpha
Helix 33
AD6
C
144 149Right-handed alpha
Helix 34
AD7
C
153 175Right-handed alpha
Helix 35
AD8
C
190 200Right-handed alpha
Helix 36
AD9
C
202 210Right-handed alpha
Helix 37
AE1
C
218 223Right-handed alpha
Helix 38
AE2
C
223 231Right-handed alpha
Helix 39
AE3
C
232 236Right-handed 310
Helix 40
AE4
D
16 29Right-handed alpha
Helix 41
AE5
D
39 53Right-handed alpha
Helix 42
AE6
D
66 82Right-handed alpha
Helix 43
AE7
D
99 103Right-handed 310
Helix 44
AE8
D
104 115Right-handed alpha
Helix 45
AE9
D
115 134Right-handed alpha
Helix 46
AF1
D
144 149Right-handed alpha
Helix 47
AF2
D
153 175Right-handed alpha
Helix 48
AF3
D
190 200Right-handed alpha
Helix 49
AF4
D
202 210Right-handed alpha
Helix 50
AF5
D
218 223Right-handed alpha
Helix 51
AF6
D
223 231Right-handed alpha
Helix 52
AF7
D
232 236Right-handed 310
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There are 4 sheets in PDB entry 5JY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
86 89parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
242 245parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
8 12parallel
Strand 4
B
86 89parallel
Strand 5
B
136 141parallel
Strand 6
B
179 186parallel
Strand 7
B
242 245parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
32 37parallel
Strand 3
C
8 12parallel
Strand 4
C
86 89parallel
Strand 5
C
136 141parallel
Strand 6
C
179 186parallel
Strand 7
C
242 245parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 61first strand
Strand 2
D
32 37parallel
Strand 3
D
8 12parallel
Strand 4
D
86 89parallel
Strand 5
D
136 141parallel
Strand 6
D
179 186parallel
Strand 7
D
242 245parallel
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