Analysis of interatomic Contacts of Structural Units in PDB entry:
5JY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JY4 entry

There are 3 chains in PDB entry 5JY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15GLY 34
A
 PHE 36GLY 389
B
 THR 15HIS 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5JY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
98 106Right-handed alpha
Helix 3
AA3
A
125 141Right-handed alpha
Helix 4
AA4
A
163 175Right-handed alpha
Helix 5
AA5
A
221 234Right-handed alpha
Helix 6
AA6
A
235 255Right-handed alpha
Helix 7
AA7
A
290 299Right-handed alpha
Helix 8
AA8
A
308 320Right-handed alpha
Helix 9
AA9
A
369 389Right-handed alpha
Helix 10
AB1
B
51 67Right-handed alpha
Helix 11
AB2
B
98 106Right-handed alpha
Helix 12
AB3
B
125 141Right-handed alpha
Helix 13
AB4
B
163 175Right-handed alpha
Helix 14
AB5
B
221 235Right-handed alpha
Helix 15
AB6
B
235 255Right-handed alpha
Helix 16
AB7
B
290 299Right-handed alpha
Helix 17
AB8
B
308 320Right-handed alpha
Helix 18
AB9
B
369 388Right-handed alpha
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There are 8 sheets in PDB entry 5JY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
179 184anti-parallel
Strand 5
A
190 195anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
A
355 364anti-parallel
Strand 8
A
147 158anti-parallel
Strand 9
A
117 123anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
179 184anti-parallel
Strand 5
A
190 195anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
A
355 364anti-parallel
Strand 8
A
147 158anti-parallel
Strand 9
A
306 307anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
87 90anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
330 335anti-parallel
Strand 5
A
340 344anti-parallel
Strand 6
A
198 203anti-parallel
Strand 7
A
206 210anti-parallel
Strand 8
A
281 285anti-parallel
Strand 9
A
257 261anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
274 278anti-parallel
Strand 3
A
267 270anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
30 33anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
179 184anti-parallel
Strand 5
B
190 195anti-parallel
Strand 6
B
348 352anti-parallel
Strand 7
B
355 364anti-parallel
Strand 8
B
147 158anti-parallel
Strand 9
B
117 123anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
30 33anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
179 184anti-parallel
Strand 5
B
190 195anti-parallel
Strand 6
B
348 352anti-parallel
Strand 7
B
355 364anti-parallel
Strand 8
B
147 158anti-parallel
Strand 9
B
306 307anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
330 335anti-parallel
Strand 5
B
340 344anti-parallel
Strand 6
B
198 203anti-parallel
Strand 7
B
206 209anti-parallel
Strand 8
B
281 285anti-parallel
Strand 9
B
257 261anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
274 278anti-parallel
Strand 3
B
267 270anti-parallel
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