Analysis of interatomic Contacts of Structural Units in PDB entry:
5JY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JY9 entry

There are 2 chains in PDB entry 5JY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	VAL 434
B	LYS 2	VAL 434

There are 25 helices in PDB entry 5JY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	27	Right-handed alpha
Helix 2	AA2	A	75	85	Right-handed alpha
Helix 3	AA3	A	101	108	Right-handed alpha
Helix 4	AA4	A	171	188	Right-handed alpha
Helix 5	AA5	A	207	218	Right-handed alpha
Helix 6	AA6	A	264	277	Right-handed alpha
Helix 7	AA7	A	278	298	Right-handed alpha
Helix 8	AA8	A	335	344	Right-handed alpha
Helix 9	AA9	A	346	349	Right-handed 310
Helix 10	AB1	A	353	365	Right-handed alpha
Helix 11	AB2	A	413	426	Right-handed alpha
Helix 12	AB3	A	427	432	Right-handed 310
Helix 13	AB4	B	12	14	Right-handed 310
Helix 14	AB5	B	15	27	Right-handed alpha
Helix 15	AB6	B	75	86	Right-handed alpha
Helix 16	AB7	B	101	107	Right-handed alpha
Helix 17	AB8	B	141	152	Right-handed alpha
Helix 18	AB9	B	171	188	Right-handed alpha
Helix 19	AC1	B	207	218	Right-handed alpha
Helix 20	AC2	B	264	278	Right-handed alpha
Helix 21	AC3	B	278	298	Right-handed alpha
Helix 22	AC4	B	335	348	Right-handed alpha
Helix 23	AC5	B	353	365	Right-handed alpha
Helix 24	AC6	B	413	426	Right-handed alpha
Helix 25	AC7	B	427	431	Right-handed 310

There are 7 sheets in PDB entry 5JY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	40	45	anti-parallel
Strand 4	A	32	37	anti-parallel
Strand 5	A	223	229	anti-parallel
Strand 6	A	232	238	anti-parallel
Strand 7	A	392	395	anti-parallel
Strand 8	A	400	408	anti-parallel
Strand 9	A	193	201	anti-parallel
Strand 10	A	351	352	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	60	64	anti-parallel
Strand 3	A	49	53	anti-parallel
Strand 4	A	119	123	anti-parallel
Strand 5	A	94	98	anti-parallel
Strand 6	A	375	379	anti-parallel
Strand 7	A	384	388	anti-parallel
Strand 8	A	241	246	anti-parallel
Strand 9	A	249	252	anti-parallel
Strand 10	A	319	329	anti-parallel
Strand 11	A	255	260	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	60	64	anti-parallel
Strand 3	A	49	53	anti-parallel
Strand 4	A	119	123	anti-parallel
Strand 5	A	94	98	anti-parallel
Strand 6	A	375	379	anti-parallel
Strand 7	A	384	388	anti-parallel
Strand 8	A	241	246	anti-parallel
Strand 9	A	249	252	anti-parallel
Strand 10	A	319	329	anti-parallel
Strand 11	A	306	316	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	126	131	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	32	37	anti-parallel
Strand 6	B	223	229	anti-parallel
Strand 7	B	232	238	anti-parallel
Strand 8	B	392	395	anti-parallel
Strand 9	B	400	408	anti-parallel
Strand 10	B	193	201	anti-parallel
Strand 11	B	351	352	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	49	53	anti-parallel
Strand 4	B	119	123	anti-parallel
Strand 5	B	94	98	anti-parallel
Strand 6	B	375	379	anti-parallel
Strand 7	B	383	388	anti-parallel
Strand 8	B	241	246	anti-parallel
Strand 9	B	249	252	anti-parallel
Strand 10	B	319	329	anti-parallel
Strand 11	B	255	260	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	49	53	anti-parallel
Strand 4	B	119	123	anti-parallel
Strand 5	B	94	98	anti-parallel
Strand 6	B	375	379	anti-parallel
Strand 7	B	383	388	anti-parallel
Strand 8	B	241	246	anti-parallel
Strand 9	B	249	252	anti-parallel
Strand 10	B	319	329	anti-parallel
Strand 11	B	306	316	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JY9