Analysis of interatomic Contacts of Structural Units in PDB entry:
5JYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JYV entry

There are 2 chains in PDB entry 5JYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 613GLN 729
B
 MET 1LYS 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5JYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
622 636Right-handed alpha
Helix 2
AA2
A
647 654Right-handed alpha
Helix 3
AA3
A
669 681Right-handed alpha
Helix 4
AA4
A
709 721Right-handed alpha
Helix 5
AA5
B
18 35Right-handed alpha
Helix 6
AA6
B
50 57Right-handed alpha
Helix 7
AA7
B
82 99Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JYV.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 705first strand
Strand 2
A
687 692parallel
Strand 3
A
658 662parallel
Strand 4
A
615 619parallel
Strand 5
A
639 643parallel
Strand 6
B
40 46parallel
Strand 7
B
8 14parallel
Strand 8
B
64 67anti-parallel
Strand 9
B
74 77anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il