Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JZC entry

There are 7 chains in PDB entry 5JZC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 20	ASP 331
B	PHE 332	ASP 643
C	PHE 644	ASP 955
D	PHE 956	ASP 1267
E	PHE 1268	ASP 1579
F	PHE 1580	ASP 1891
G	PHE 1892	ASP 2203

There are100 helices in PDB entry 5JZC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	42	Right-handed alpha
Helix 2	AA2	A	48	55	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	66	79	Right-handed alpha
Helix 5	AA5	A	91	97	Right-handed alpha
Helix 6	AA6	A	106	114	Right-handed alpha
Helix 7	AA7	A	132	144	Right-handed alpha
Helix 8	AA8	A	145	146	Right-handed 310
Helix 9	AA9	A	147	151	Right-handed 310
Helix 10	AB1	A	167	178	Right-handed alpha
Helix 11	AB2	A	181	188	Right-handed alpha
Helix 12	AB3	A	196	214	Right-handed alpha
Helix 13	AB4	A	225	230	Right-handed alpha
Helix 14	AB5	A	240	260	Right-handed alpha
Helix 15	AB6	B	347	354	Right-handed alpha
Helix 16	AB7	B	360	367	Right-handed alpha
Helix 17	AB8	B	368	373	Right-handed alpha
Helix 18	AB9	B	378	391	Right-handed alpha
Helix 19	AC1	B	403	411	Right-handed alpha
Helix 20	AC2	B	418	426	Right-handed alpha
Helix 21	AC3	B	444	456	Right-handed alpha
Helix 22	AC4	B	457	458	Right-handed 310
Helix 23	AC5	B	459	463	Right-handed 310
Helix 24	AC6	B	479	490	Right-handed alpha
Helix 25	AC7	B	493	500	Right-handed alpha
Helix 26	AC8	B	508	526	Right-handed alpha
Helix 27	AC9	B	537	542	Right-handed alpha
Helix 28	AD1	B	552	572	Right-handed alpha
Helix 29	AD2	B	593	597	Right-handed 310
Helix 30	AD3	C	659	666	Right-handed alpha
Helix 31	AD4	C	672	679	Right-handed alpha
Helix 32	AD5	C	680	685	Right-handed alpha
Helix 33	AD6	C	690	703	Right-handed alpha
Helix 34	AD7	C	715	723	Right-handed alpha
Helix 35	AD8	C	730	738	Right-handed alpha
Helix 36	AD9	C	756	768	Right-handed alpha
Helix 37	AE1	C	769	770	Right-handed 310
Helix 38	AE2	C	771	775	Right-handed 310
Helix 39	AE3	C	791	802	Right-handed alpha
Helix 40	AE4	C	805	812	Right-handed alpha
Helix 41	AE5	C	820	838	Right-handed alpha
Helix 42	AE6	C	849	854	Right-handed alpha
Helix 43	AE7	C	864	884	Right-handed alpha
Helix 44	AE8	D	971	978	Right-handed alpha
Helix 45	AE9	D	984	991	Right-handed alpha
Helix 46	AF1	D	992	997	Right-handed alpha
Helix 47	AF2	D	1002	1015	Right-handed alpha
Helix 48	AF3	D	1027	1035	Right-handed alpha
Helix 49	AF4	D	1042	1050	Right-handed alpha
Helix 50	AF5	D	1068	1080	Right-handed alpha
Helix 51	AF6	D	1081	1082	Right-handed 310
Helix 52	AF7	D	1083	1087	Right-handed 310
Helix 53	AF8	D	1103	1114	Right-handed alpha
Helix 54	AF9	D	1117	1124	Right-handed alpha
Helix 55	AG1	D	1132	1150	Right-handed alpha
Helix 56	AG2	D	1161	1166	Right-handed alpha
Helix 57	AG3	D	1176	1196	Right-handed alpha
Helix 58	AG4	E	1283	1290	Right-handed alpha
Helix 59	AG5	E	1296	1303	Right-handed alpha
Helix 60	AG6	E	1304	1309	Right-handed alpha
Helix 61	AG7	E	1314	1327	Right-handed alpha
Helix 62	AG8	E	1339	1347	Right-handed alpha
Helix 63	AG9	E	1354	1362	Right-handed alpha
Helix 64	AH1	E	1380	1392	Right-handed alpha
Helix 65	AH2	E	1393	1394	Right-handed 310
Helix 66	AH3	E	1395	1399	Right-handed 310
Helix 67	AH4	E	1415	1426	Right-handed alpha
Helix 68	AH5	E	1429	1436	Right-handed alpha
Helix 69	AH6	E	1444	1462	Right-handed alpha
Helix 70	AH7	E	1473	1478	Right-handed alpha
Helix 71	AH8	E	1488	1508	Right-handed alpha
Helix 72	AH9	F	1595	1602	Right-handed alpha
Helix 73	AI1	F	1608	1615	Right-handed alpha
Helix 74	AI2	F	1616	1621	Right-handed alpha
Helix 75	AI3	F	1626	1639	Right-handed alpha
Helix 76	AI4	F	1651	1659	Right-handed alpha
Helix 77	AI5	F	1666	1674	Right-handed alpha
Helix 78	AI6	F	1692	1704	Right-handed alpha
Helix 79	AI7	F	1705	1706	Right-handed 310
Helix 80	AI8	F	1707	1711	Right-handed 310
Helix 81	AI9	F	1727	1738	Right-handed alpha
Helix 82	AJ1	F	1741	1748	Right-handed alpha
Helix 83	AJ2	F	1756	1774	Right-handed alpha
Helix 84	AJ3	F	1785	1790	Right-handed alpha
Helix 85	AJ4	F	1800	1820	Right-handed alpha
Helix 86	AJ5	F	1841	1845	Right-handed 310
Helix 87	AJ6	G	1907	1914	Right-handed alpha
Helix 88	AJ7	G	1920	1927	Right-handed alpha
Helix 89	AJ8	G	1928	1933	Right-handed alpha
Helix 90	AJ9	G	1938	1951	Right-handed alpha
Helix 91	AK1	G	1963	1971	Right-handed alpha
Helix 92	AK2	G	1978	1986	Right-handed alpha
Helix 93	AK3	G	2004	2016	Right-handed alpha
Helix 94	AK4	G	2017	2018	Right-handed 310
Helix 95	AK5	G	2019	2023	Right-handed 310
Helix 96	AK6	G	2039	2050	Right-handed alpha
Helix 97	AK7	G	2053	2061	Right-handed alpha
Helix 98	AK8	G	2068	2086	Right-handed alpha
Helix 99	AK9	G	2097	2102	Right-handed alpha
Helix 100	AL1	G	2112	2132	Right-handed alpha

There are 14 sheets in PDB entry 5JZC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	262	266	parallel
Strand 3	A	218	222	parallel
Strand 4	A	157	161	parallel
Strand 5	A	189	193	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	318	322	anti-parallel
Strand 3	A	325	327	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	574	578	parallel
Strand 3	B	530	534	parallel
Strand 4	B	469	473	parallel
Strand 5	B	501	505	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	615	first strand
Strand 2	B	630	634	anti-parallel
Strand 3	B	637	639	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	746	749	first strand
Strand 2	C	886	890	parallel
Strand 3	C	842	846	parallel
Strand 4	C	781	785	parallel
Strand 5	C	813	817	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	925	927	first strand
Strand 2	C	942	946	anti-parallel
Strand 3	C	949	951	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1058	1061	first strand
Strand 2	D	1198	1202	parallel
Strand 3	D	1154	1158	parallel
Strand 4	D	1093	1097	parallel
Strand 5	D	1125	1129	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1237	1239	first strand
Strand 2	D	1254	1258	anti-parallel
Strand 3	D	1261	1263	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1370	1373	first strand
Strand 2	E	1510	1514	parallel
Strand 3	E	1466	1470	parallel
Strand 4	E	1405	1409	parallel
Strand 5	E	1437	1441	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1542	1544	first strand
Strand 2	E	1549	1552	anti-parallel
Strand 3	E	1566	1570	anti-parallel
Strand 4	E	1573	1575	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1682	1685	first strand
Strand 2	F	1822	1826	parallel
Strand 3	F	1778	1782	parallel
Strand 4	F	1717	1721	parallel
Strand 5	F	1749	1753	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1854	1856	first strand
Strand 2	F	1861	1864	anti-parallel
Strand 3	F	1878	1882	anti-parallel
Strand 4	F	1885	1887	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2028	2033	first strand
Strand 2	G	2088	2094	parallel
Strand 3	G	2134	2138	parallel
Strand 4	G	1994	1997	parallel
Strand 5	G	2162	2163	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2166	2168	first strand
Strand 2	G	2173	2176	anti-parallel
Strand 3	G	2190	2194	anti-parallel
Strand 4	G	2197	2199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JZC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZC