Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JZE entry

There are 4 chains in PDB entry 5JZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 79GLY 154
A
 VAL 4VAL 162
D
 PRO 79GLY 154
C
 VAL 4ARG 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5JZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
101 113Right-handed alpha
Helix 2
AA2
B
116 118Right-handed 310
Helix 3
AA3
B
134 139Right-handed 310
Helix 4
AA4
A
5 9Right-handed alpha
Helix 5
AA5
A
28 31Right-handed alpha
Helix 6
AA6
A
42 52Right-handed alpha
Helix 7
AA7
A
60 66Right-handed alpha
Helix 8
AA8
A
67 76Right-handed alpha
Helix 9
AA9
A
79 86Right-handed alpha
Helix 10
AB1
A
88 97Right-handed alpha
Helix 11
AB2
A
105 116Right-handed alpha
Helix 12
AB3
A
140 144Right-handed 310
Helix 13
AB4
D
101 114Right-handed alpha
Helix 14
AB5
D
116 118Right-handed 310
Helix 15
AB6
D
134 139Right-handed 310
Helix 16
AB7
C
5 10Right-handed alpha
Helix 17
AB8
C
28 31Right-handed alpha
Helix 18
AB9
C
42 52Right-handed alpha
Helix 19
AC1
C
60 67Right-handed alpha
Helix 20
AC2
C
67 76Right-handed alpha
Helix 21
AC3
C
79 86Right-handed alpha
Helix 22
AC4
C
88 97Right-handed alpha
Helix 23
AC5
C
105 116Right-handed alpha
Helix 24
AC6
C
140 144Right-handed 310
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There are 6 sheets in PDB entry 5JZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
145 150parallel
Strand 4
B
120 124anti-parallel
Strand 5
B
127 128anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
A
103 104anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
129 136anti-parallel
Strand 4
A
119 124anti-parallel
Strand 5
A
145 150parallel
Strand 6
A
154 160anti-parallel
Strand 7
A
32 35anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 96first strand
Strand 2
D
80 85anti-parallel
Strand 3
D
145 150parallel
Strand 4
D
120 124anti-parallel
Strand 5
D
127 128anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 154first strand
Strand 2
C
103 104anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 16first strand
Strand 2
C
19 27anti-parallel
Strand 3
C
129 136anti-parallel
Strand 4
C
119 124anti-parallel
Strand 5
C
145 150parallel
Strand 6
C
154 160anti-parallel
Strand 7
C
32 35anti-parallel
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