Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JZG entry

There are 3 chains in PDB entry 5JZG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 54ALA 279
B
 GLY 1GLN 235
C
 GLY 1GLN 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5JZG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 74Right-handed alpha
Helix 2
AA2
A
99 107Right-handed alpha
Helix 3
AA3
A
145 149Right-handed 310
Helix 4
AA4
B
43 48Right-handed alpha
Helix 5
AA5
B
64 69Right-handed 310
Helix 6
AA6
B
90 95Right-handed alpha
Helix 7
AA7
B
96 103Right-handed alpha
Helix 8
AA8
B
142 147Right-handed alpha
Helix 9
AA9
C
101 103Right-handed 310
Helix 10
AB1
C
122 126Right-handed 310
Helix 11
AB2
C
149 153Right-handed 310
Helix 12
AB3
C
157 164Right-handed alpha
Helix 13
AB4
C
251 255Right-handed 310
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There are 11 sheets in PDB entry 5JZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
111 122anti-parallel
Strand 4
A
166 169anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
111 122anti-parallel
Strand 4
A
178 179anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
206 210anti-parallel
Strand 3
A
128 133anti-parallel
Strand 4
A
155 158anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
205 213anti-parallel
Strand 3
B
70 72anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
205 213anti-parallel
Strand 3
B
112 119anti-parallel
Strand 4
B
164 166anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
187 197anti-parallel
Strand 3
B
125 133anti-parallel
Strand 4
B
150 155anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
105 109anti-parallel
Strand 3
B
218 222anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 84first strand
Strand 2
C
87 89anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
267 272parallel
Strand 3
C
165 177anti-parallel
Strand 4
C
309 325anti-parallel
Strand 5
C
130 131anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
267 272parallel
Strand 3
C
165 177anti-parallel
Strand 4
C
309 325anti-parallel
Strand 5
C
135 137anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
C
144 148anti-parallel
Strand 3
C
289 300anti-parallel
Strand 4
C
185 194anti-parallel
Strand 5
C
257 261anti-parallel
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