Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JZM entry

There are 5 chains in PDB entry 5JZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 5	GLN 285
B	MET 5	GLN 285
C	MET 5	GLN 285
D	MET 5	GLN 285
E	MET 5	TRP 176

There are 78 helices in PDB entry 5JZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	76	90	Right-handed alpha
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	115	131	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	157	162	Right-handed 310
Helix 7	AA7	A	163	166	Right-handed 310
Helix 8	AA8	A	167	180	Right-handed alpha
Helix 9	AA9	A	189	198	Right-handed 310
Helix 10	AB1	A	212	219	Right-handed alpha
Helix 11	AB2	A	220	223	Right-handed 310
Helix 12	AB3	A	232	240	Right-handed alpha
Helix 13	AB4	A	267	283	Right-handed alpha
Helix 14	AB5	B	23	31	Right-handed alpha
Helix 15	AB6	B	76	90	Right-handed alpha
Helix 16	AB7	B	107	111	Right-handed 310
Helix 17	AB8	B	115	131	Right-handed alpha
Helix 18	AB9	B	135	142	Right-handed alpha
Helix 19	AC1	B	157	162	Right-handed 310
Helix 20	AC2	B	163	166	Right-handed 310
Helix 21	AC3	B	167	180	Right-handed alpha
Helix 22	AC4	B	189	198	Right-handed 310
Helix 23	AC5	B	212	217	Right-handed alpha
Helix 24	AC6	B	218	223	Right-handed 310
Helix 25	AC7	B	232	240	Right-handed alpha
Helix 26	AC8	B	267	284	Right-handed alpha
Helix 27	AC9	C	23	31	Right-handed alpha
Helix 28	AD1	C	76	90	Right-handed alpha
Helix 29	AD2	C	107	111	Right-handed 310
Helix 30	AD3	C	115	131	Right-handed alpha
Helix 31	AD4	C	135	140	Right-handed alpha
Helix 32	AD5	C	157	162	Right-handed 310
Helix 33	AD6	C	163	166	Right-handed 310
Helix 34	AD7	C	167	180	Right-handed alpha
Helix 35	AD8	C	189	198	Right-handed 310
Helix 36	AD9	C	212	219	Right-handed alpha
Helix 37	AE1	C	220	223	Right-handed 310
Helix 38	AE2	C	232	240	Right-handed alpha
Helix 39	AE3	C	267	284	Right-handed alpha
Helix 40	AE4	D	23	31	Right-handed alpha
Helix 41	AE5	D	76	90	Right-handed alpha
Helix 42	AE6	D	107	111	Right-handed 310
Helix 43	AE7	D	115	131	Right-handed alpha
Helix 44	AE8	D	135	142	Right-handed alpha
Helix 45	AE9	D	157	162	Right-handed 310
Helix 46	AF1	D	163	166	Right-handed 310
Helix 47	AF2	D	167	180	Right-handed alpha
Helix 48	AF3	D	189	198	Right-handed 310
Helix 49	AF4	D	212	217	Right-handed alpha
Helix 50	AF5	D	218	223	Right-handed 310
Helix 51	AF6	D	232	240	Right-handed alpha
Helix 52	AF7	D	267	284	Right-handed alpha
Helix 53	AF8	E	23	31	Right-handed alpha
Helix 54	AF9	E	76	90	Right-handed alpha
Helix 55	AG1	E	107	111	Right-handed 310
Helix 56	AG2	E	115	131	Right-handed alpha
Helix 57	AG3	E	135	142	Right-handed alpha
Helix 58	AG4	E	157	162	Right-handed 310
Helix 59	AG5	E	163	166	Right-handed 310
Helix 60	AG6	E	167	180	Right-handed alpha
Helix 61	AG7	E	189	198	Right-handed 310
Helix 62	AG8	E	212	217	Right-handed alpha
Helix 63	AG9	E	218	223	Right-handed 310
Helix 64	AH1	E	232	240	Right-handed alpha
Helix 65	AH2	E	267	284	Right-handed alpha
Helix 66	AH3	F	23	31	Right-handed alpha
Helix 67	AH4	F	76	90	Right-handed alpha
Helix 68	AH5	F	107	111	Right-handed 310
Helix 69	AH6	F	115	131	Right-handed alpha
Helix 70	AH7	F	135	140	Right-handed alpha
Helix 71	AH8	F	157	162	Right-handed 310
Helix 72	AH9	F	163	166	Right-handed 310
Helix 73	AI1	F	167	180	Right-handed alpha
Helix 74	AI2	F	189	198	Right-handed 310
Helix 75	AI3	F	212	217	Right-handed alpha
Helix 76	AI4	F	218	223	Right-handed 310
Helix 77	AI5	F	232	240	Right-handed alpha
Helix 78	AI6	F	267	284	Right-handed alpha

There are 18 sheets in PDB entry 5JZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	19	21	anti-parallel
Strand 3	A	70	72	parallel
Strand 4	A	62	64	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	93	98	parallel
Strand 3	A	52	56	parallel
Strand 4	A	149	154	parallel
Strand 5	A	183	187	parallel
Strand 6	A	259	262	parallel
Strand 7	A	253	256	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	243	244	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	19	21	anti-parallel
Strand 3	B	70	72	parallel
Strand 4	B	62	64	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	93	98	parallel
Strand 3	B	52	56	parallel
Strand 4	B	149	154	parallel
Strand 5	B	183	187	parallel
Strand 6	B	259	262	parallel
Strand 7	B	253	256	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	243	244	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	19	21	anti-parallel
Strand 3	C	70	72	parallel
Strand 4	C	62	64	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	93	98	parallel
Strand 3	C	52	56	parallel
Strand 4	C	149	154	parallel
Strand 5	C	183	187	parallel
Strand 6	C	259	262	parallel
Strand 7	C	253	256	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	243	244	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	19	21	anti-parallel
Strand 3	D	70	72	parallel
Strand 4	D	62	64	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	93	98	parallel
Strand 3	D	52	56	parallel
Strand 4	D	149	154	parallel
Strand 5	D	183	187	parallel
Strand 6	D	259	262	parallel
Strand 7	D	253	256	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	243	244	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	19	21	anti-parallel
Strand 3	E	70	72	parallel
Strand 4	E	62	64	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	93	98	parallel
Strand 3	E	52	56	parallel
Strand 4	E	149	154	parallel
Strand 5	E	183	187	parallel
Strand 6	E	259	262	parallel
Strand 7	E	253	256	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	243	244	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	19	21	anti-parallel
Strand 3	F	70	72	parallel
Strand 4	F	62	64	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	93	98	parallel
Strand 3	F	52	56	parallel
Strand 4	F	149	154	parallel
Strand 5	F	183	187	parallel
Strand 6	F	259	262	parallel
Strand 7	F	253	256	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	243	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZM