Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JZO entry

There are 6 chains in PDB entry 5JZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 5	GLN 285
B	MET 5	GLN 285
C	MET 5	GLN 285
D	MET 5	GLN 285
E	MET 5	GLN 285
F	MET 5	GLN 285

There are 84 helices in PDB entry 5JZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	76	90	Right-handed alpha
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	115	131	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	143	147	Right-handed 310
Helix 7	AA7	A	157	162	Right-handed 310
Helix 8	AA8	A	163	166	Right-handed 310
Helix 9	AA9	A	167	180	Right-handed alpha
Helix 10	AB1	A	189	198	Right-handed 310
Helix 11	AB2	A	200	204	Right-handed 310
Helix 12	AB3	A	212	217	Right-handed alpha
Helix 13	AB4	A	218	223	Right-handed 310
Helix 14	AB5	A	232	240	Right-handed alpha
Helix 15	AB6	A	267	284	Right-handed alpha
Helix 16	AB7	B	23	31	Right-handed alpha
Helix 17	AB8	B	76	90	Right-handed alpha
Helix 18	AB9	B	107	111	Right-handed 310
Helix 19	AC1	B	115	131	Right-handed alpha
Helix 20	AC2	B	135	142	Right-handed alpha
Helix 21	AC3	B	157	162	Right-handed 310
Helix 22	AC4	B	163	166	Right-handed 310
Helix 23	AC5	B	167	180	Right-handed alpha
Helix 24	AC6	B	189	198	Right-handed 310
Helix 25	AC7	B	212	217	Right-handed alpha
Helix 26	AC8	B	218	223	Right-handed 310
Helix 27	AC9	B	232	240	Right-handed alpha
Helix 28	AD1	B	267	283	Right-handed alpha
Helix 29	AD2	C	23	31	Right-handed alpha
Helix 30	AD3	C	76	91	Right-handed alpha
Helix 31	AD4	C	107	111	Right-handed 310
Helix 32	AD5	C	115	131	Right-handed alpha
Helix 33	AD6	C	135	139	Right-handed alpha
Helix 34	AD7	C	157	162	Right-handed 310
Helix 35	AD8	C	163	166	Right-handed 310
Helix 36	AD9	C	167	180	Right-handed alpha
Helix 37	AE1	C	189	198	Right-handed 310
Helix 38	AE2	C	212	217	Right-handed alpha
Helix 39	AE3	C	218	223	Right-handed 310
Helix 40	AE4	C	232	240	Right-handed alpha
Helix 41	AE5	C	264	266	Right-handed 310
Helix 42	AE6	C	267	283	Right-handed alpha
Helix 43	AE7	D	23	31	Right-handed alpha
Helix 44	AE8	D	76	90	Right-handed alpha
Helix 45	AE9	D	107	111	Right-handed 310
Helix 46	AF1	D	115	131	Right-handed alpha
Helix 47	AF2	D	135	142	Right-handed alpha
Helix 48	AF3	D	157	162	Right-handed 310
Helix 49	AF4	D	163	166	Right-handed 310
Helix 50	AF5	D	167	180	Right-handed alpha
Helix 51	AF6	D	189	198	Right-handed 310
Helix 52	AF7	D	212	219	Right-handed alpha
Helix 53	AF8	D	220	223	Right-handed 310
Helix 54	AF9	D	232	240	Right-handed alpha
Helix 55	AG1	D	264	266	Right-handed 310
Helix 56	AG2	D	267	284	Right-handed alpha
Helix 57	AG3	E	23	31	Right-handed alpha
Helix 58	AG4	E	76	90	Right-handed alpha
Helix 59	AG5	E	107	111	Right-handed 310
Helix 60	AG6	E	115	131	Right-handed alpha
Helix 61	AG7	E	135	142	Right-handed alpha
Helix 62	AG8	E	163	166	Right-handed 310
Helix 63	AG9	E	167	180	Right-handed alpha
Helix 64	AH1	E	189	198	Right-handed 310
Helix 65	AH2	E	212	217	Right-handed alpha
Helix 66	AH3	E	218	223	Right-handed 310
Helix 67	AH4	E	232	239	Right-handed alpha
Helix 68	AH5	E	264	266	Right-handed 310
Helix 69	AH6	E	267	284	Right-handed alpha
Helix 70	AH7	F	23	31	Right-handed alpha
Helix 71	AH8	F	76	90	Right-handed alpha
Helix 72	AH9	F	107	111	Right-handed 310
Helix 73	AI1	F	115	125	Right-handed alpha
Helix 74	AI2	F	125	131	Right-handed alpha
Helix 75	AI3	F	135	140	Right-handed alpha
Helix 76	AI4	F	157	162	Right-handed 310
Helix 77	AI5	F	163	166	Right-handed 310
Helix 78	AI6	F	167	180	Right-handed alpha
Helix 79	AI7	F	189	198	Right-handed 310
Helix 80	AI8	F	212	217	Right-handed alpha
Helix 81	AI9	F	218	223	Right-handed 310
Helix 82	AJ1	F	232	239	Right-handed alpha
Helix 83	AJ2	F	264	266	Right-handed 310
Helix 84	AJ3	F	267	283	Right-handed alpha

There are 18 sheets in PDB entry 5JZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	19	21	anti-parallel
Strand 3	A	70	72	parallel
Strand 4	A	62	64	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	93	98	parallel
Strand 3	A	52	56	parallel
Strand 4	A	149	154	parallel
Strand 5	A	183	187	parallel
Strand 6	A	259	262	parallel
Strand 7	A	253	256	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	243	244	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	19	21	anti-parallel
Strand 3	B	70	72	parallel
Strand 4	B	62	64	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	93	98	parallel
Strand 3	B	52	56	parallel
Strand 4	B	149	154	parallel
Strand 5	B	183	187	parallel
Strand 6	B	259	262	parallel
Strand 7	B	253	256	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	243	244	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	19	21	anti-parallel
Strand 3	C	70	72	parallel
Strand 4	C	62	64	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	93	98	parallel
Strand 3	C	52	56	parallel
Strand 4	C	149	154	parallel
Strand 5	C	183	187	parallel
Strand 6	C	259	262	parallel
Strand 7	C	253	256	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	243	244	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	19	21	anti-parallel
Strand 3	D	70	72	parallel
Strand 4	D	62	64	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	93	98	parallel
Strand 3	D	52	56	parallel
Strand 4	D	149	154	parallel
Strand 5	D	183	187	parallel
Strand 6	D	259	262	parallel
Strand 7	D	253	256	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	243	244	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	19	21	anti-parallel
Strand 3	E	70	72	parallel
Strand 4	E	62	64	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	93	98	parallel
Strand 3	E	52	56	parallel
Strand 4	E	149	154	parallel
Strand 5	E	183	187	parallel
Strand 6	E	259	262	parallel
Strand 7	E	253	256	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	243	244	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	19	21	anti-parallel
Strand 3	F	70	72	parallel
Strand 4	F	62	64	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	93	98	parallel
Strand 3	F	52	56	parallel
Strand 4	F	149	154	parallel
Strand 5	F	183	187	parallel
Strand 6	F	259	262	parallel
Strand 7	F	253	256	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	208	first strand
Strand 2	F	242	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZO