Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JZT entry

There are 7 chains in PDB entry 5JZT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ALA 424
B	GLU 2	ALA 424
C	GLU 2	ALA 424
D	GLU 2	ALA 424
E	GLU 2	ALA 424
F	GLU 2	ALA 424
G	GLU 2	ALA 424

There are 77 helices in PDB entry 5JZT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	33	Right-handed alpha
Helix 2	AA2	A	34	36	Right-handed 310
Helix 3	AA3	A	37	42	Right-handed alpha
Helix 4	AA4	A	74	79	Right-handed alpha
Helix 5	AA5	A	98	108	Right-handed alpha
Helix 6	AA6	A	112	124	Right-handed alpha
Helix 7	AA7	A	158	162	Right-handed 310
Helix 8	AA8	A	321	325	Right-handed 310
Helix 9	AA9	A	352	363	Right-handed alpha
Helix 10	AB1	A	374	380	Right-handed alpha
Helix 11	AB2	A	385	394	Right-handed alpha
Helix 12	AB3	B	27	33	Right-handed alpha
Helix 13	AB4	B	34	36	Right-handed 310
Helix 14	AB5	B	37	42	Right-handed alpha
Helix 15	AB6	B	74	79	Right-handed alpha
Helix 16	AB7	B	98	108	Right-handed alpha
Helix 17	AB8	B	112	124	Right-handed alpha
Helix 18	AB9	B	158	162	Right-handed 310
Helix 19	AC1	B	321	325	Right-handed 310
Helix 20	AC2	B	352	363	Right-handed alpha
Helix 21	AC3	B	374	380	Right-handed alpha
Helix 22	AC4	B	385	394	Right-handed alpha
Helix 23	AC5	C	27	33	Right-handed alpha
Helix 24	AC6	C	34	36	Right-handed 310
Helix 25	AC7	C	37	42	Right-handed alpha
Helix 26	AC8	C	74	79	Right-handed alpha
Helix 27	AC9	C	98	108	Right-handed alpha
Helix 28	AD1	C	112	124	Right-handed alpha
Helix 29	AD2	C	158	162	Right-handed 310
Helix 30	AD3	C	321	325	Right-handed 310
Helix 31	AD4	C	352	363	Right-handed alpha
Helix 32	AD5	C	374	380	Right-handed alpha
Helix 33	AD6	C	385	394	Right-handed alpha
Helix 34	AD7	D	27	33	Right-handed alpha
Helix 35	AD8	D	34	36	Right-handed 310
Helix 36	AD9	D	37	42	Right-handed alpha
Helix 37	AE1	D	74	79	Right-handed alpha
Helix 38	AE2	D	98	108	Right-handed alpha
Helix 39	AE3	D	112	124	Right-handed alpha
Helix 40	AE4	D	158	162	Right-handed 310
Helix 41	AE5	D	321	325	Right-handed 310
Helix 42	AE6	D	352	363	Right-handed alpha
Helix 43	AE7	D	374	380	Right-handed alpha
Helix 44	AE8	D	385	394	Right-handed alpha
Helix 45	AE9	E	27	33	Right-handed alpha
Helix 46	AF1	E	34	36	Right-handed 310
Helix 47	AF2	E	37	42	Right-handed alpha
Helix 48	AF3	E	74	79	Right-handed alpha
Helix 49	AF4	E	98	108	Right-handed alpha
Helix 50	AF5	E	112	124	Right-handed alpha
Helix 51	AF6	E	158	162	Right-handed 310
Helix 52	AF7	E	321	325	Right-handed 310
Helix 53	AF8	E	352	363	Right-handed alpha
Helix 54	AF9	E	374	380	Right-handed alpha
Helix 55	AG1	E	385	394	Right-handed alpha
Helix 56	AG2	F	27	33	Right-handed alpha
Helix 57	AG3	F	34	36	Right-handed 310
Helix 58	AG4	F	37	42	Right-handed alpha
Helix 59	AG5	F	74	79	Right-handed alpha
Helix 60	AG6	F	98	108	Right-handed alpha
Helix 61	AG7	F	112	124	Right-handed alpha
Helix 62	AG8	F	158	162	Right-handed 310
Helix 63	AG9	F	321	325	Right-handed 310
Helix 64	AH1	F	352	363	Right-handed alpha
Helix 65	AH2	F	374	380	Right-handed alpha
Helix 66	AH3	F	385	394	Right-handed alpha
Helix 67	AH4	G	27	33	Right-handed alpha
Helix 68	AH5	G	34	36	Right-handed 310
Helix 69	AH6	G	37	42	Right-handed alpha
Helix 70	AH7	G	74	79	Right-handed alpha
Helix 71	AH8	G	98	108	Right-handed alpha
Helix 72	AH9	G	112	124	Right-handed alpha
Helix 73	AI1	G	158	162	Right-handed 310
Helix 74	AI2	G	321	325	Right-handed 310
Helix 75	AI3	G	352	363	Right-handed alpha
Helix 76	AI4	G	374	380	Right-handed alpha
Helix 77	AI5	G	385	394	Right-handed alpha

There are 42 sheets in PDB entry 5JZT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	54	57	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	302	306	anti-parallel
Strand 3	A	402	405	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	280	283	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	243	first strand
Strand 2	A	255	277	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	289	300	anti-parallel
Strand 3	A	194	205	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	300	first strand
Strand 2	A	409	416	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	54	57	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	302	306	anti-parallel
Strand 3	B	402	405	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	280	283	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	243	first strand
Strand 2	B	255	277	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	289	300	anti-parallel
Strand 3	B	194	205	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	300	first strand
Strand 2	B	409	416	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	54	57	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	302	306	anti-parallel
Strand 3	C	402	405	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	218	first strand
Strand 2	C	280	283	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	243	first strand
Strand 2	C	255	277	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	421	first strand
Strand 2	C	289	300	anti-parallel
Strand 3	C	194	205	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	300	first strand
Strand 2	C	409	416	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	54	57	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	D	302	306	anti-parallel
Strand 3	D	402	405	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	218	first strand
Strand 2	D	280	283	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	243	first strand
Strand 2	D	255	277	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	421	first strand
Strand 2	D	289	300	anti-parallel
Strand 3	D	194	205	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	300	first strand
Strand 2	D	409	416	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	50	first strand
Strand 2	E	54	57	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	191	first strand
Strand 2	E	302	306	anti-parallel
Strand 3	E	402	405	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	218	first strand
Strand 2	E	280	283	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	243	first strand
Strand 2	E	255	277	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	421	first strand
Strand 2	E	289	300	anti-parallel
Strand 3	E	194	205	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	300	first strand
Strand 2	E	409	416	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	50	first strand
Strand 2	F	54	57	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	191	first strand
Strand 2	F	302	306	anti-parallel
Strand 3	F	402	405	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	218	first strand
Strand 2	F	280	283	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	221	243	first strand
Strand 2	F	255	277	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	421	first strand
Strand 2	F	289	300	anti-parallel
Strand 3	F	194	205	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	300	first strand
Strand 2	F	409	416	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	50	first strand
Strand 2	G	54	57	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	191	first strand
Strand 2	G	302	306	anti-parallel
Strand 3	G	402	405	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	215	218	first strand
Strand 2	G	280	283	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	221	243	first strand
Strand 2	G	255	277	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	419	421	first strand
Strand 2	G	289	300	anti-parallel
Strand 3	G	194	205	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	300	first strand
Strand 2	G	409	416	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JZT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZT