Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JZX entry

There are 6 chains in PDB entry 5JZX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	LEU 369
B	PHE 10	MET 368
C	PHE 10	LEU 369
D	PHE 10	LEU 369
E	ALA 11	LEU 369
F	ALA 11	MET 368

There are 67 helices in PDB entry 5JZX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed 310
Helix 2	AA2	A	22	25	Right-handed 310
Helix 3	AA3	A	41	56	Right-handed alpha
Helix 4	AA4	A	105	116	Right-handed alpha
Helix 5	AA5	A	121	125	Right-handed 310
Helix 6	AA6	A	169	172	Right-handed 310
Helix 7	AA7	A	210	218	Right-handed alpha
Helix 8	AA8	A	226	241	Right-handed alpha
Helix 9	AA9	A	249	253	Right-handed 310
Helix 10	AB1	A	265	278	Right-handed alpha
Helix 11	AB2	A	296	304	Right-handed alpha
Helix 12	AB3	A	335	355	Right-handed alpha
Helix 13	AB4	B	22	25	Right-handed 310
Helix 14	AB5	B	41	55	Right-handed alpha
Helix 15	AB6	B	105	116	Right-handed alpha
Helix 16	AB7	B	121	125	Right-handed 310
Helix 17	AB8	B	133	138	Right-handed alpha
Helix 18	AB9	B	169	172	Right-handed 310
Helix 19	AC1	B	210	217	Right-handed alpha
Helix 20	AC2	B	226	241	Right-handed alpha
Helix 21	AC3	B	249	253	Right-handed 310
Helix 22	AC4	B	296	304	Right-handed alpha
Helix 23	AC5	B	335	355	Right-handed alpha
Helix 24	AC6	C	22	25	Right-handed 310
Helix 25	AC7	C	41	56	Right-handed alpha
Helix 26	AC8	C	58	62	Right-handed 310
Helix 27	AC9	C	105	116	Right-handed alpha
Helix 28	AD1	C	121	125	Right-handed 310
Helix 29	AD2	C	169	172	Right-handed 310
Helix 30	AD3	C	210	218	Right-handed alpha
Helix 31	AD4	C	226	241	Right-handed alpha
Helix 32	AD5	C	249	253	Right-handed 310
Helix 33	AD6	C	265	279	Right-handed alpha
Helix 34	AD7	C	296	304	Right-handed alpha
Helix 35	AD8	C	335	355	Right-handed alpha
Helix 36	AD9	D	22	25	Right-handed 310
Helix 37	AE1	D	41	56	Right-handed alpha
Helix 38	AE2	D	58	62	Right-handed 310
Helix 39	AE3	D	105	116	Right-handed alpha
Helix 40	AE4	D	121	125	Right-handed 310
Helix 41	AE5	D	168	172	Right-handed alpha
Helix 42	AE6	D	210	217	Right-handed alpha
Helix 43	AE7	D	226	241	Right-handed alpha
Helix 44	AE8	D	249	253	Right-handed 310
Helix 45	AE9	D	265	279	Right-handed alpha
Helix 46	AF1	D	296	304	Right-handed alpha
Helix 47	AF2	D	335	354	Right-handed alpha
Helix 48	AF3	E	22	25	Right-handed 310
Helix 49	AF4	E	41	55	Right-handed alpha
Helix 50	AF5	E	105	116	Right-handed alpha
Helix 51	AF6	E	121	125	Right-handed 310
Helix 52	AF7	E	169	172	Right-handed 310
Helix 53	AF8	E	210	215	Right-handed alpha
Helix 54	AF9	E	226	242	Right-handed alpha
Helix 55	AG1	E	249	253	Right-handed 310
Helix 56	AG2	E	296	304	Right-handed alpha
Helix 57	AG3	E	335	355	Right-handed alpha
Helix 58	AG4	F	21	25	Right-handed 310
Helix 59	AG5	F	41	54	Right-handed alpha
Helix 60	AG6	F	105	116	Right-handed alpha
Helix 61	AG7	F	121	125	Right-handed 310
Helix 62	AG8	F	210	217	Right-handed alpha
Helix 63	AG9	F	226	240	Right-handed alpha
Helix 64	AH1	F	249	253	Right-handed 310
Helix 65	AH2	F	265	279	Right-handed alpha
Helix 66	AH3	F	296	305	Right-handed alpha
Helix 67	AH4	F	335	355	Right-handed alpha

There are 34 sheets in PDB entry 5JZX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	20	first strand
Strand 2	A	32	39	anti-parallel
Strand 3	A	82	86	parallel
Strand 4	A	64	66	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	363	365	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	97	101	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	150	157	anti-parallel
Strand 5	A	162	167	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	144	145	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	292	295	anti-parallel
Strand 3	A	286	289	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	328	330	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	32	39	anti-parallel
Strand 3	B	82	86	parallel
Strand 4	B	64	66	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	363	365	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	97	101	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	150	157	anti-parallel
Strand 5	B	162	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	144	145	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	324	330	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	20	first strand
Strand 2	C	32	39	anti-parallel
Strand 3	C	82	86	parallel
Strand 4	C	64	65	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	363	365	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	97	101	anti-parallel
Strand 3	C	190	198	anti-parallel
Strand 4	C	150	157	anti-parallel
Strand 5	C	163	167	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	144	145	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	264	first strand
Strand 2	C	293	295	anti-parallel
Strand 3	C	286	287	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	328	330	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	20	first strand
Strand 2	D	32	39	anti-parallel
Strand 3	D	82	86	parallel
Strand 4	D	64	66	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	363	365	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	97	101	anti-parallel
Strand 3	D	190	198	anti-parallel
Strand 4	D	150	157	anti-parallel
Strand 5	D	163	167	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	141	first strand
Strand 2	D	144	145	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	264	first strand
Strand 2	D	292	295	anti-parallel
Strand 3	D	286	289	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	321	first strand
Strand 2	D	324	330	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	20	first strand
Strand 2	E	32	39	anti-parallel
Strand 3	E	82	86	parallel
Strand 4	E	64	66	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	74	first strand
Strand 2	E	363	365	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	97	101	anti-parallel
Strand 3	E	190	198	anti-parallel
Strand 4	E	150	157	anti-parallel
Strand 5	E	162	167	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	144	145	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	320	first strand
Strand 2	E	328	330	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	84	86	parallel
Strand 3	F	65	66	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	74	first strand
Strand 2	F	363	365	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	97	101	anti-parallel
Strand 3	F	190	198	anti-parallel
Strand 4	F	150	157	anti-parallel
Strand 5	F	163	167	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	141	first strand
Strand 2	F	144	145	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	264	first strand
Strand 2	F	292	295	anti-parallel
Strand 3	F	286	289	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	318	320	first strand
Strand 2	F	328	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JZX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZX