Analysis of interatomic Contacts of Structural Units in PDB entry:
5K02

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K02 entry

There are 24 chains in PDB entry 5K02 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 153
B	ALA 1	GLN 153
C	ALA 1	GLN 153
D	ALA 1	GLN 153
E	ALA 1	GLN 153
F	ALA 1	GLN 153
G	ALA 1	GLN 153
H	ALA 1	GLN 153
I	ALA 1	GLN 153
J	ALA 1	GLN 153
K	ALA 1	GLN 153
L	ALA 1	GLN 153
M	ALA 1	GLN 153
N	ALA 1	GLN 153
O	ALA 1	GLN 153
P	ALA 1	GLN 153
Q	ALA 1	GLN 153
R	ALA 1	GLN 153
S	ALA 1	GLN 153
T	ALA 1	GLN 153
U	ALA 1	GLN 153
V	ALA 1	GLN 153
W	ALA 1	GLN 153
X	ALA 1	GLN 153

There are 32 helices in PDB entry 5K02. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed 310
Helix 2	AA2	A	133	138	Right-handed alpha
Helix 3	AA3	B	57	61	Right-handed 310
Helix 4	AA4	C	55	61	Right-handed 310
Helix 5	AA5	C	131	135	Right-handed 310
Helix 6	AA6	D	55	61	Right-handed 310
Helix 7	AA7	D	107	111	Right-handed 310
Helix 8	AA8	E	57	61	Right-handed 310
Helix 9	AA9	F	55	61	Right-handed 310
Helix 10	AB1	G	55	61	Right-handed 310
Helix 11	AB2	G	133	138	Right-handed alpha
Helix 12	AB3	H	55	61	Right-handed 310
Helix 13	AB4	I	57	61	Right-handed 310
Helix 14	AB5	J	57	61	Right-handed 310
Helix 15	AB6	K	55	61	Right-handed 310
Helix 16	AB7	L	55	61	Right-handed 310
Helix 17	AB8	M	55	61	Right-handed 310
Helix 18	AB9	M	131	137	Right-handed alpha
Helix 19	AC1	N	55	61	Right-handed 310
Helix 20	AC2	O	55	61	Right-handed 310
Helix 21	AC3	P	57	61	Right-handed 310
Helix 22	AC4	Q	55	61	Right-handed 310
Helix 23	AC5	Q	131	135	Right-handed 310
Helix 24	AC6	R	55	61	Right-handed 310
Helix 25	AC7	S	57	61	Right-handed 310
Helix 26	AC8	T	57	61	Right-handed 310
Helix 27	AC9	U	55	61	Right-handed 310
Helix 28	AD1	U	131	135	Right-handed 310
Helix 29	AD2	V	57	61	Right-handed 310
Helix 30	AD3	W	57	61	Right-handed 310
Helix 31	AD4	W	107	111	Right-handed 310
Helix 32	AD5	X	57	61	Right-handed 310

There are 36 sheets in PDB entry 5K02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	95	101	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	2	5	anti-parallel
Strand 4	A	150	151	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	41	48	anti-parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	143	148	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	41	48	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	143	151	anti-parallel
Strand 5	B	2	10	anti-parallel
Strand 6	B	15	22	anti-parallel
Strand 7	B	29	36	anti-parallel
Strand 8	B	98	101	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	15	22	anti-parallel
Strand 3	C	29	36	anti-parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	83	89	anti-parallel
Strand 6	C	41	48	anti-parallel
Strand 7	C	116	120	anti-parallel
Strand 8	C	143	152	anti-parallel
Strand 9	C	2	8	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	101	first strand
Strand 2	D	29	36	anti-parallel
Strand 3	D	15	22	anti-parallel
Strand 4	D	2	8	anti-parallel
Strand 5	D	150	152	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	41	48	anti-parallel
Strand 3	D	116	120	anti-parallel
Strand 4	D	143	148	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	151	first strand
Strand 2	E	2	10	anti-parallel
Strand 3	E	143	148	anti-parallel
Strand 4	E	116	120	anti-parallel
Strand 5	E	41	48	anti-parallel
Strand 6	E	83	89	anti-parallel
Strand 7	E	94	101	anti-parallel
Strand 8	E	29	36	anti-parallel
Strand 9	E	15	22	anti-parallel
Strand 10	E	2	10	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	8	first strand
Strand 2	F	15	22	anti-parallel
Strand 3	F	29	36	anti-parallel
Strand 4	F	95	101	anti-parallel
Strand 5	F	83	89	anti-parallel
Strand 6	F	41	48	anti-parallel
Strand 7	F	116	120	anti-parallel
Strand 8	F	143	151	anti-parallel
Strand 9	F	2	8	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	101	first strand
Strand 2	G	29	36	anti-parallel
Strand 3	G	15	22	anti-parallel
Strand 4	G	2	8	anti-parallel
Strand 5	G	150	151	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	89	first strand
Strand 2	G	41	48	anti-parallel
Strand 3	G	116	120	anti-parallel
Strand 4	G	143	148	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	101	first strand
Strand 2	H	29	36	anti-parallel
Strand 3	H	15	22	anti-parallel
Strand 4	H	2	9	anti-parallel
Strand 5	H	150	151	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	89	first strand
Strand 2	H	41	48	anti-parallel
Strand 3	H	116	120	anti-parallel
Strand 4	H	143	148	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	8	first strand
Strand 2	I	15	22	anti-parallel
Strand 3	I	29	36	anti-parallel
Strand 4	I	94	101	anti-parallel
Strand 5	I	83	89	anti-parallel
Strand 6	I	41	48	anti-parallel
Strand 7	I	116	120	anti-parallel
Strand 8	I	143	151	anti-parallel
Strand 9	I	2	8	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	89	first strand
Strand 2	J	41	48	anti-parallel
Strand 3	J	116	120	anti-parallel
Strand 4	J	143	148	anti-parallel
Strand 5	J	2	10	anti-parallel
Strand 6	J	15	22	anti-parallel
Strand 7	J	29	36	anti-parallel
Strand 8	J	95	101	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	89	first strand
Strand 2	J	41	48	anti-parallel
Strand 3	J	116	120	anti-parallel
Strand 4	J	143	148	anti-parallel
Strand 5	J	2	10	anti-parallel
Strand 6	J	150	152	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	95	101	first strand
Strand 2	K	29	36	anti-parallel
Strand 3	K	15	22	anti-parallel
Strand 4	K	2	9	anti-parallel
Strand 5	K	150	151	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	89	first strand
Strand 2	K	41	48	anti-parallel
Strand 3	K	116	120	anti-parallel
Strand 4	K	143	148	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	89	first strand
Strand 2	L	41	48	anti-parallel
Strand 3	L	116	120	anti-parallel
Strand 4	L	143	150	anti-parallel
Strand 5	L	2	8	anti-parallel
Strand 6	L	15	22	anti-parallel
Strand 7	L	29	36	anti-parallel
Strand 8	L	95	101	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	89	first strand
Strand 2	M	41	48	anti-parallel
Strand 3	M	116	120	anti-parallel
Strand 4	M	143	151	anti-parallel
Strand 5	M	2	9	anti-parallel
Strand 6	M	15	22	anti-parallel
Strand 7	M	29	36	anti-parallel
Strand 8	M	95	101	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	8	first strand
Strand 2	N	15	22	anti-parallel
Strand 3	N	29	36	anti-parallel
Strand 4	N	95	101	anti-parallel
Strand 5	N	83	89	anti-parallel
Strand 6	N	41	48	anti-parallel
Strand 7	N	116	120	anti-parallel
Strand 8	N	143	152	anti-parallel
Strand 9	N	2	8	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	89	first strand
Strand 2	O	41	48	anti-parallel
Strand 3	O	116	120	anti-parallel
Strand 4	O	143	151	anti-parallel
Strand 5	O	2	10	anti-parallel
Strand 6	O	15	22	anti-parallel
Strand 7	O	29	36	anti-parallel
Strand 8	O	95	101	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	95	101	first strand
Strand 2	P	29	36	anti-parallel
Strand 3	P	15	22	anti-parallel
Strand 4	P	2	8	anti-parallel
Strand 5	P	150	151	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	83	89	first strand
Strand 2	P	41	48	anti-parallel
Strand 3	P	116	120	anti-parallel
Strand 4	P	143	148	anti-parallel

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There are 10 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	150	151	first strand
Strand 2	Q	2	10	anti-parallel
Strand 3	Q	143	148	anti-parallel
Strand 4	Q	116	120	anti-parallel
Strand 5	Q	41	48	anti-parallel
Strand 6	Q	83	89	anti-parallel
Strand 7	Q	95	101	anti-parallel
Strand 8	Q	29	36	anti-parallel
Strand 9	Q	15	22	anti-parallel
Strand 10	Q	2	10	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	2	10	first strand
Strand 2	R	15	22	anti-parallel
Strand 3	R	29	36	anti-parallel
Strand 4	R	95	101	anti-parallel
Strand 5	R	83	89	anti-parallel
Strand 6	R	41	48	anti-parallel
Strand 7	R	116	120	anti-parallel
Strand 8	R	143	151	anti-parallel
Strand 9	R	2	10	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	95	101	first strand
Strand 2	S	29	36	anti-parallel
Strand 3	S	15	22	anti-parallel
Strand 4	S	2	9	anti-parallel
Strand 5	S	150	151	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	83	89	first strand
Strand 2	S	41	48	anti-parallel
Strand 3	S	116	120	anti-parallel
Strand 4	S	143	148	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	95	101	first strand
Strand 2	T	29	36	anti-parallel
Strand 3	T	15	22	anti-parallel
Strand 4	T	2	8	anti-parallel
Strand 5	T	150	151	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	83	89	first strand
Strand 2	T	41	48	anti-parallel
Strand 3	T	116	120	anti-parallel
Strand 4	T	143	148	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	83	89	first strand
Strand 2	U	41	48	anti-parallel
Strand 3	U	116	120	anti-parallel
Strand 4	U	143	151	anti-parallel
Strand 5	U	2	10	anti-parallel
Strand 6	U	15	22	anti-parallel
Strand 7	U	29	36	anti-parallel
Strand 8	U	98	101	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	95	101	first strand
Strand 2	V	29	36	anti-parallel
Strand 3	V	15	22	anti-parallel
Strand 4	V	2	8	anti-parallel
Strand 5	V	150	152	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	83	89	first strand
Strand 2	V	41	48	anti-parallel
Strand 3	V	116	120	anti-parallel
Strand 4	V	143	148	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	95	101	first strand
Strand 2	W	29	36	anti-parallel
Strand 3	W	15	22	anti-parallel
Strand 4	W	3	8	anti-parallel
Strand 5	W	150	151	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	83	89	first strand
Strand 2	W	41	48	anti-parallel
Strand 3	W	116	120	anti-parallel
Strand 4	W	143	148	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	83	89	first strand
Strand 2	X	41	48	anti-parallel
Strand 3	X	116	120	anti-parallel
Strand 4	X	143	151	anti-parallel
Strand 5	X	2	8	anti-parallel
Strand 6	X	15	22	anti-parallel
Strand 7	X	29	36	anti-parallel
Strand 8	X	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K02

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K02