Analysis of interatomic Contacts of Structural Units in PDB entry:
5K04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K04 entry

There are 2 chains in PDB entry 5K04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8LEU 745
B
 THR 2PRO 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5K04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
20 32Right-handed alpha
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
52 65Right-handed alpha
Helix 5
AA5
A
69 83Right-handed alpha
Helix 6
AA6
A
85 100Right-handed alpha
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
120 134Right-handed alpha
Helix 9
AA9
A
137 153Right-handed alpha
Helix 10
AB1
A
156 173Right-handed alpha
Helix 11
AB2
A
179 188Right-handed alpha
Helix 12
AB3
A
191 200Right-handed alpha
Helix 13
AB4
A
207 221Right-handed alpha
Helix 14
AB5
A
223 238Right-handed alpha
Helix 15
AB6
A
242 256Right-handed alpha
Helix 16
AB7
A
259 265Right-handed alpha
Helix 17
AB8
A
271 285Right-handed alpha
Helix 18
AB9
A
289 301Right-handed alpha
Helix 19
AC1
A
305 311Right-handed alpha
Helix 20
AC2
A
316 322Right-handed alpha
Helix 21
AC3
A
331 342Right-handed alpha
Helix 22
AC4
A
347 354Right-handed alpha
Helix 23
AC5
A
366 379Right-handed alpha
Helix 24
AC6
A
382 400Right-handed alpha
Helix 25
AC7
A
403 415Right-handed alpha
Helix 26
AC8
A
419 422Right-handed 310
Helix 27
AC9
A
423 430Right-handed alpha
Helix 28
AD1
A
434 441Right-handed alpha
Helix 29
AD2
A
442 445Right-handed 310
Helix 30
AD3
A
450 481Right-handed alpha
Helix 31
AD4
A
483 499Right-handed alpha
Helix 32
AD5
A
500 517Right-handed alpha
Helix 33
AD6
A
519 533Right-handed alpha
Helix 34
AD7
A
533 538Right-handed alpha
Helix 35
AD8
A
548 552Right-handed 310
Helix 36
AD9
A
565 580Right-handed alpha
Helix 37
AE1
A
585 597Right-handed alpha
Helix 38
AE2
A
602 621Right-handed alpha
Helix 39
AE3
A
624 639Right-handed alpha
Helix 40
AE4
A
640 645Right-handed alpha
Helix 41
AE5
A
646 648Right-handed 310
Helix 42
AE6
A
655 678Right-handed alpha
Helix 43
AE7
A
680 691Right-handed alpha
Helix 44
AE8
A
692 699Right-handed alpha
Helix 45
AE9
A
701 713Right-handed alpha
Helix 46
AF1
A
723 743Right-handed alpha
Helix 47
AF2
B
8 14Right-handed 310
Helix 48
AF3
B
15 20Right-handed alpha
Helix 49
AF4
B
28 39Right-handed alpha
Helix 50
AF5
B
82 85Right-handed 310
Helix 51
AF6
B
88 97Right-handed alpha
Helix 52
AF7
B
100 105Right-handed alpha
Helix 53
AF8
B
117 127Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5K04.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
53 65anti-parallel
Strand 4
B
70 80anti-parallel
Strand 5
B
108 114parallel
Strand 6
B
156 162anti-parallel
Strand 7
B
130 135anti-parallel
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