Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K0B entry

There are 6 chains in PDB entry 5K0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	SER 216
B	GLY 2	SER 216
C	ASP 3	PRO 218
D	ASP 3	SER 219
E	ASP 3	PRO 218
F	ASP 3	TYR 200

There are 84 helices in PDB entry 5K0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	17	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	42	58	Right-handed alpha
Helix 4	AA4	A	70	78	Right-handed alpha
Helix 5	AA5	A	92	107	Right-handed alpha
Helix 6	AA6	A	108	110	Right-handed 310
Helix 7	AA7	A	118	123	Right-handed alpha
Helix 8	AA8	A	125	131	Right-handed alpha
Helix 9	AA9	A	143	145	Right-handed 310
Helix 10	AB1	A	146	157	Right-handed alpha
Helix 11	AB2	A	176	186	Right-handed alpha
Helix 12	AB3	B	4	17	Right-handed alpha
Helix 13	AB4	B	21	36	Right-handed alpha
Helix 14	AB5	B	42	58	Right-handed alpha
Helix 15	AB6	B	70	78	Right-handed alpha
Helix 16	AB7	B	92	107	Right-handed alpha
Helix 17	AB8	B	108	110	Right-handed 310
Helix 18	AB9	B	118	123	Right-handed alpha
Helix 19	AC1	B	125	130	Right-handed alpha
Helix 20	AC2	B	143	145	Right-handed 310
Helix 21	AC3	B	146	157	Right-handed alpha
Helix 22	AC4	B	176	186	Right-handed alpha
Helix 23	AC5	C	4	17	Right-handed alpha
Helix 24	AC6	C	21	36	Right-handed alpha
Helix 25	AC7	C	42	58	Right-handed alpha
Helix 26	AC8	C	70	78	Right-handed alpha
Helix 27	AC9	C	92	107	Right-handed alpha
Helix 28	AD1	C	108	110	Right-handed 310
Helix 29	AD2	C	118	123	Right-handed alpha
Helix 30	AD3	C	125	130	Right-handed alpha
Helix 31	AD4	C	143	145	Right-handed 310
Helix 32	AD5	C	146	157	Right-handed alpha
Helix 33	AD6	C	176	186	Right-handed alpha
Helix 34	AD7	D	4	17	Right-handed alpha
Helix 35	AD8	D	21	36	Right-handed alpha
Helix 36	AD9	D	42	58	Right-handed alpha
Helix 37	AE1	D	70	78	Right-handed alpha
Helix 38	AE2	D	92	107	Right-handed alpha
Helix 39	AE3	D	118	123	Right-handed alpha
Helix 40	AE4	D	125	131	Right-handed alpha
Helix 41	AE5	D	143	145	Right-handed 310
Helix 42	AE6	D	146	157	Right-handed alpha
Helix 43	AE7	D	176	186	Right-handed alpha
Helix 44	AE8	E	4	15	Right-handed alpha
Helix 45	AE9	E	21	36	Right-handed alpha
Helix 46	AF1	E	42	58	Right-handed alpha
Helix 47	AF2	E	70	78	Right-handed alpha
Helix 48	AF3	E	92	107	Right-handed alpha
Helix 49	AF4	E	118	123	Right-handed alpha
Helix 50	AF5	E	125	130	Right-handed alpha
Helix 51	AF6	E	143	145	Right-handed 310
Helix 52	AF7	E	146	157	Right-handed alpha
Helix 53	AF8	E	176	186	Right-handed alpha
Helix 54	AF9	F	4	17	Right-handed alpha
Helix 55	AG1	F	21	36	Right-handed alpha
Helix 56	AG2	F	42	58	Right-handed alpha
Helix 57	AG3	F	70	78	Right-handed alpha
Helix 58	AG4	F	92	107	Right-handed alpha
Helix 59	AG5	F	108	110	Right-handed 310
Helix 60	AG6	F	118	123	Right-handed alpha
Helix 61	AG7	F	125	131	Right-handed alpha
Helix 62	AG8	F	143	145	Right-handed 310
Helix 63	AG9	F	146	157	Right-handed alpha
Helix 64	AH1	F	176	186	Right-handed alpha
Helix 65	AH2	G	4	17	Right-handed alpha
Helix 66	AH3	G	21	36	Right-handed alpha
Helix 67	AH4	G	42	58	Right-handed alpha
Helix 68	AH5	G	70	78	Right-handed alpha
Helix 69	AH6	G	92	107	Right-handed alpha
Helix 70	AH7	G	118	123	Right-handed alpha
Helix 71	AH8	G	124	126	Right-handed 310
Helix 72	AH9	G	143	145	Right-handed 310
Helix 73	AI1	G	146	157	Right-handed alpha
Helix 74	AI2	G	176	186	Right-handed alpha
Helix 75	AI3	H	4	15	Right-handed alpha
Helix 76	AI4	H	21	36	Right-handed alpha
Helix 77	AI5	H	42	58	Right-handed alpha
Helix 78	AI6	H	70	78	Right-handed alpha
Helix 79	AI7	H	92	107	Right-handed alpha
Helix 80	AI8	H	118	123	Right-handed alpha
Helix 81	AI9	H	125	131	Right-handed alpha
Helix 82	AJ1	H	143	145	Right-handed 310
Helix 83	AJ2	H	146	157	Right-handed alpha
Helix 84	AJ3	H	176	186	Right-handed alpha

There are 4 sheets in PDB entry 5K0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	85	90	parallel
Strand 3	A	61	65	parallel
Strand 4	A	135	140	parallel
Strand 5	A	160	168	parallel
Strand 6	C	189	212	anti-parallel
Strand 7	A	189	212	anti-parallel
Strand 8	F	189	212	anti-parallel
Strand 9	D	160	169	anti-parallel
Strand 10	D	135	140	parallel
Strand 11	D	61	65	parallel
Strand 12	D	85	90	parallel
Strand 13	D	112	116	parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	85	90	parallel
Strand 3	C	61	65	parallel
Strand 4	C	135	140	parallel
Strand 5	C	160	168	parallel
Strand 6	A	189	212	anti-parallel
Strand 7	F	189	212	anti-parallel
Strand 8	D	189	212	anti-parallel
Strand 9	F	165	168	anti-parallel
Strand 10	F	137	140	parallel
Strand 11	F	61	65	parallel
Strand 12	F	85	89	parallel
Strand 13	F	112	115	parallel

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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	85	90	parallel
Strand 3	B	61	65	parallel
Strand 4	B	135	140	parallel
Strand 5	B	160	168	parallel
Strand 6	E	189	212	anti-parallel
Strand 7	B	189	212	anti-parallel
Strand 8	G	189	212	anti-parallel
Strand 9	H	189	212	anti-parallel
Strand 10	G	160	168	anti-parallel
Strand 11	G	135	140	parallel
Strand 12	G	61	65	parallel
Strand 13	G	85	90	parallel
Strand 14	G	112	116	parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	116	first strand
Strand 2	E	85	90	parallel
Strand 3	E	61	65	parallel
Strand 4	E	135	140	parallel
Strand 5	E	160	169	parallel
Strand 6	B	189	212	anti-parallel
Strand 7	G	189	212	anti-parallel
Strand 8	H	160	168	anti-parallel
Strand 9	H	135	140	parallel
Strand 10	H	61	65	parallel
Strand 11	H	85	90	parallel
Strand 12	H	112	116	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0B