Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K0P entry

There are 10 chains in PDB entry 5K0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	TYR 108
B	LYS 6	PRO 105
C	LYS 6	PRO 106
D	LYS 6	PRO 106
E	LYS 6	PRO 105
F	LYS 6	PRO 106
G	LYS 6	PRO 106
H	LYS 6	VAL 104
I	LYS 6	VAL 107
J	LYS 6	PRO 105

There are 20 helices in PDB entry 5K0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	54	Right-handed alpha
Helix 2	AA2	A	61	78	Right-handed alpha
Helix 3	AA3	B	44	54	Right-handed alpha
Helix 4	AA4	B	61	78	Right-handed alpha
Helix 5	AA5	C	44	54	Right-handed alpha
Helix 6	AA6	C	61	78	Right-handed alpha
Helix 7	AA7	D	44	54	Right-handed alpha
Helix 8	AA8	D	61	78	Right-handed alpha
Helix 9	AA9	E	44	54	Right-handed alpha
Helix 10	AB1	E	61	78	Right-handed alpha
Helix 11	AB2	F	44	54	Right-handed alpha
Helix 12	AB3	F	61	78	Right-handed alpha
Helix 13	AB4	G	44	54	Right-handed alpha
Helix 14	AB5	G	61	78	Right-handed alpha
Helix 15	AB6	H	44	54	Right-handed alpha
Helix 16	AB7	H	61	78	Right-handed alpha
Helix 17	AB8	I	44	54	Right-handed alpha
Helix 18	AB9	I	61	78	Right-handed alpha
Helix 19	AC1	J	44	54	Right-handed alpha
Helix 20	AC2	J	61	78	Right-handed alpha

There are 2 sheets in PDB entry 5K0P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	20	first strand
Strand 2	A	27	37	anti-parallel
Strand 3	A	81	90	anti-parallel
Strand 4	A	93	102	anti-parallel
Strand 5	E	10	20	anti-parallel
Strand 6	E	27	36	anti-parallel
Strand 7	E	82	90	anti-parallel
Strand 8	E	93	101	anti-parallel
Strand 9	F	10	20	anti-parallel
Strand 10	F	27	36	anti-parallel
Strand 11	F	82	90	anti-parallel
Strand 12	F	93	101	anti-parallel
Strand 13	H	10	20	anti-parallel
Strand 14	H	27	36	anti-parallel
Strand 15	H	82	90	anti-parallel
Strand 16	H	93	101	anti-parallel
Strand 17	D	10	20	anti-parallel
Strand 18	D	27	36	anti-parallel
Strand 19	D	81	90	anti-parallel
Strand 20	D	93	102	anti-parallel
Strand 21	A	10	20	anti-parallel

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There are 21 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	20	first strand
Strand 2	B	27	37	anti-parallel
Strand 3	B	81	90	anti-parallel
Strand 4	B	93	101	anti-parallel
Strand 5	C	10	20	anti-parallel
Strand 6	C	27	37	anti-parallel
Strand 7	C	81	90	anti-parallel
Strand 8	C	93	101	anti-parallel
Strand 9	G	10	20	anti-parallel
Strand 10	G	27	37	anti-parallel
Strand 11	G	81	90	anti-parallel
Strand 12	G	93	101	anti-parallel
Strand 13	J	10	20	anti-parallel
Strand 14	J	27	36	anti-parallel
Strand 15	J	81	90	anti-parallel
Strand 16	J	93	102	anti-parallel
Strand 17	I	10	20	anti-parallel
Strand 18	I	27	36	anti-parallel
Strand 19	I	81	90	anti-parallel
Strand 20	I	93	102	anti-parallel
Strand 21	B	10	20	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0P