Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K0T entry

There are 3 chains in PDB entry 5K0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 508
B
 SER 2GLU 510
C
 MET 1THR 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 5K0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 40Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
67 86Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
168 170Right-handed 310
Helix 7
AA7
A
171 182Right-handed alpha
Helix 8
AA8
A
188 201Right-handed alpha
Helix 9
AA9
A
228 235Right-handed alpha
Helix 10
AB1
A
235 240Right-handed alpha
Helix 11
AB2
A
248 254Right-handed 310
Helix 12
AB3
A
265 271Right-handed alpha
Helix 13
AB4
A
271 280Right-handed alpha
Helix 14
AB5
A
310 319Right-handed alpha
Helix 15
AB6
A
319 331Right-handed alpha
Helix 16
AB7
A
340 352Right-handed alpha
Helix 17
AB8
A
354 371Right-handed alpha
Helix 18
AB9
A
382 405Right-handed alpha
Helix 19
AC1
A
407 430Right-handed alpha
Helix 20
AC2
A
430 438Right-handed alpha
Helix 21
AC3
A
438 461Right-handed alpha
Helix 22
AC4
A
464 475Right-handed alpha
Helix 23
AC5
A
478 483Right-handed 310
Helix 24
AC6
A
484 490Right-handed alpha
Helix 25
AC7
B
20 40Right-handed alpha
Helix 26
AC8
B
54 65Right-handed alpha
Helix 27
AC9
B
67 86Right-handed alpha
Helix 28
AD1
B
98 115Right-handed alpha
Helix 29
AD2
B
168 170Right-handed 310
Helix 30
AD3
B
171 182Right-handed alpha
Helix 31
AD4
B
188 201Right-handed alpha
Helix 32
AD5
B
228 235Right-handed alpha
Helix 33
AD6
B
235 240Right-handed alpha
Helix 34
AD7
B
248 254Right-handed 310
Helix 35
AD8
B
265 271Right-handed alpha
Helix 36
AD9
B
271 280Right-handed alpha
Helix 37
AE1
B
310 319Right-handed alpha
Helix 38
AE2
B
319 331Right-handed alpha
Helix 39
AE3
B
340 352Right-handed alpha
Helix 40
AE4
B
354 371Right-handed alpha
Helix 41
AE5
B
382 405Right-handed alpha
Helix 42
AE6
B
407 430Right-handed alpha
Helix 43
AE7
B
430 438Right-handed alpha
Helix 44
AE8
B
438 461Right-handed alpha
Helix 45
AE9
B
464 475Right-handed alpha
Helix 46
AF1
B
478 483Right-handed 310
Helix 47
AF2
B
484 490Right-handed alpha
Helix 48
AF3
C
20 40Right-handed alpha
Helix 49
AF4
C
54 65Right-handed alpha
Helix 50
AF5
C
67 86Right-handed alpha
Helix 51
AF6
C
98 115Right-handed alpha
Helix 52
AF7
C
168 170Right-handed 310
Helix 53
AF8
C
171 182Right-handed alpha
Helix 54
AF9
C
188 201Right-handed alpha
Helix 55
AG1
C
228 235Right-handed alpha
Helix 56
AG2
C
235 240Right-handed alpha
Helix 57
AG3
C
248 254Right-handed 310
Helix 58
AG4
C
265 271Right-handed alpha
Helix 59
AG5
C
271 280Right-handed alpha
Helix 60
AG6
C
310 319Right-handed alpha
Helix 61
AG7
C
319 331Right-handed alpha
Helix 62
AG8
C
340 352Right-handed alpha
Helix 63
AG9
C
354 371Right-handed alpha
Helix 64
AH1
C
382 405Right-handed alpha
Helix 65
AH2
C
407 430Right-handed alpha
Helix 66
AH3
C
430 438Right-handed alpha
Helix 67
AH4
C
438 461Right-handed alpha
Helix 68
AH5
C
464 475Right-handed alpha
Helix 69
AH6
C
478 483Right-handed 310
Helix 70
AH7
C
484 490Right-handed alpha
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There are 14 sheets in PDB entry 5K0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
43 50parallel
Strand 3
A
5 10parallel
Strand 4
A
258 262parallel
Strand 5
A
288 291parallel
Strand 6
A
186 187parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
162 166anti-parallel
Strand 3
A
206 207anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
157 159anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
148 149anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
222 227anti-parallel
Strand 3
A
218 219anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
337 339parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
43 50parallel
Strand 3
B
5 10parallel
Strand 4
B
258 262parallel
Strand 5
B
288 291parallel
Strand 6
B
186 187parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 126first strand
Strand 2
B
158 166anti-parallel
Strand 3
B
206 207anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
222 227anti-parallel
Strand 3
B
218 219anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 295first strand
Strand 2
B
337 338parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 95first strand
Strand 2
C
43 50parallel
Strand 3
C
5 10parallel
Strand 4
C
258 262parallel
Strand 5
C
288 291parallel
Strand 6
C
186 187parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 127first strand
Strand 2
C
157 166anti-parallel
Strand 3
C
206 207anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
222 227anti-parallel
Strand 3
C
218 219anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
294 295first strand
Strand 2
C
337 338parallel
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