Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K0Z entry

There are 4 chains in PDB entry 5K0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ASP 331
B	ALA 1	ASP 331
C	ALA 1	ASP 331
D	ALA 1	ASP 331

There are 48 helices in PDB entry 5K0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	30	41	Right-handed alpha
Helix 3	AA3	A	54	66	Right-handed alpha
Helix 4	AA4	A	67	71	Right-handed 310
Helix 5	AA5	A	109	127	Right-handed alpha
Helix 6	AA6	A	138	149	Right-handed alpha
Helix 7	AA7	A	153	155	Right-handed 310
Helix 8	AA8	A	162	176	Right-handed alpha
Helix 9	AA9	A	210	214	Right-handed alpha
Helix 10	AB1	A	226	245	Right-handed alpha
Helix 11	AB2	A	248	264	Right-handed alpha
Helix 12	AB3	A	308	327	Right-handed alpha
Helix 13	AB4	B	2	7	Right-handed alpha
Helix 14	AB5	B	30	41	Right-handed alpha
Helix 15	AB6	B	54	66	Right-handed alpha
Helix 16	AB7	B	67	71	Right-handed 310
Helix 17	AB8	B	109	127	Right-handed alpha
Helix 18	AB9	B	138	149	Right-handed alpha
Helix 19	AC1	B	153	155	Right-handed 310
Helix 20	AC2	B	162	176	Right-handed alpha
Helix 21	AC3	B	210	214	Right-handed alpha
Helix 22	AC4	B	226	245	Right-handed alpha
Helix 23	AC5	B	248	264	Right-handed alpha
Helix 24	AC6	B	308	327	Right-handed alpha
Helix 25	AC7	C	2	7	Right-handed alpha
Helix 26	AC8	C	30	41	Right-handed alpha
Helix 27	AC9	C	54	66	Right-handed alpha
Helix 28	AD1	C	67	71	Right-handed 310
Helix 29	AD2	C	109	127	Right-handed alpha
Helix 30	AD3	C	138	149	Right-handed alpha
Helix 31	AD4	C	153	155	Right-handed 310
Helix 32	AD5	C	162	176	Right-handed alpha
Helix 33	AD6	C	210	214	Right-handed alpha
Helix 34	AD7	C	226	245	Right-handed alpha
Helix 35	AD8	C	248	264	Right-handed alpha
Helix 36	AD9	C	308	327	Right-handed alpha
Helix 37	AE1	D	2	7	Right-handed alpha
Helix 38	AE2	D	30	41	Right-handed alpha
Helix 39	AE3	D	54	66	Right-handed alpha
Helix 40	AE4	D	67	71	Right-handed 310
Helix 41	AE5	D	109	127	Right-handed alpha
Helix 42	AE6	D	138	149	Right-handed alpha
Helix 43	AE7	D	153	155	Right-handed 310
Helix 44	AE8	D	162	176	Right-handed alpha
Helix 45	AE9	D	210	214	Right-handed alpha
Helix 46	AF1	D	226	245	Right-handed alpha
Helix 47	AF2	D	248	264	Right-handed alpha
Helix 48	AF3	D	308	327	Right-handed alpha

There are 12 sheets in PDB entry 5K0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	C	299	303	anti-parallel
Strand 3	C	287	294	anti-parallel
Strand 4	C	268	275	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	46	50	parallel
Strand 3	A	22	25	parallel
Strand 4	A	90	93	parallel
Strand 5	A	131	134	parallel
Strand 6	A	157	159	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	196	205	anti-parallel
Strand 3	A	208	209	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	275	first strand
Strand 2	A	287	294	anti-parallel
Strand 3	A	299	303	anti-parallel
Strand 4	C	8	10	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	D	299	303	anti-parallel
Strand 3	D	287	294	anti-parallel
Strand 4	D	268	275	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	46	50	parallel
Strand 3	B	22	25	parallel
Strand 4	B	90	93	parallel
Strand 5	B	131	134	parallel
Strand 6	B	157	159	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	190	first strand
Strand 2	B	196	205	anti-parallel
Strand 3	B	208	209	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	275	first strand
Strand 2	B	287	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	D	8	10	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	78	first strand
Strand 2	C	46	50	parallel
Strand 3	C	22	25	parallel
Strand 4	C	90	93	parallel
Strand 5	C	131	134	parallel
Strand 6	C	157	159	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	190	first strand
Strand 2	C	196	205	anti-parallel
Strand 3	C	208	209	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	78	first strand
Strand 2	D	46	50	parallel
Strand 3	D	22	25	parallel
Strand 4	D	90	93	parallel
Strand 5	D	131	134	parallel
Strand 6	D	157	159	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	190	first strand
Strand 2	D	196	205	anti-parallel
Strand 3	D	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K0Z