Analysis of interatomic Contacts of Structural Units in PDB entry:
5K10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K10 entry

There are 2 chains in PDB entry 5K10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 413
B
 LYS 3LYS 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5K10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
79 86Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
185 204Right-handed alpha
Helix 7
AA7
A
216 234Right-handed alpha
Helix 8
AA8
A
235 241Right-handed alpha
Helix 9
AA9
A
242 244Right-handed 310
Helix 10
AB1
A
251 260Right-handed alpha
Helix 11
AB2
A
329 348Right-handed alpha
Helix 12
AB3
A
349 369Right-handed alpha
Helix 13
AB4
A
373 381Right-handed alpha
Helix 14
AB5
A
387 391Right-handed 310
Helix 15
AB6
A
396 411Right-handed alpha
Helix 16
AB7
B
16 31Right-handed alpha
Helix 17
AB8
B
45 49Right-handed 310
Helix 18
AB9
B
54 68Right-handed alpha
Helix 19
AC1
B
79 86Right-handed alpha
Helix 20
AC2
B
94 104Right-handed alpha
Helix 21
AC3
B
185 204Right-handed alpha
Helix 22
AC4
B
216 234Right-handed alpha
Helix 23
AC5
B
235 241Right-handed alpha
Helix 24
AC6
B
242 244Right-handed 310
Helix 25
AC7
B
251 260Right-handed alpha
Helix 26
AC8
B
329 348Right-handed alpha
Helix 27
AC9
B
349 369Right-handed alpha
Helix 28
AD1
B
373 381Right-handed alpha
Helix 29
AD2
B
387 391Right-handed 310
Helix 30
AD3
B
396 411Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5K10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
35 38parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
41 43parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
303 307parallel
Strand 3
A
292 296anti-parallel
Strand 4
A
106 109anti-parallel
Strand 5
A
129 132anti-parallel
Strand 6
A
266 269parallel
Strand 7
A
207 211parallel
Strand 8
A
249 250parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
178 184anti-parallel
Strand 3
B
178 184anti-parallel
Strand 4
B
141 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
35 38parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
41 43parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
303 307parallel
Strand 3
B
292 296anti-parallel
Strand 4
B
106 109anti-parallel
Strand 5
B
129 132anti-parallel
Strand 6
B
266 269parallel
Strand 7
B
207 211parallel
Strand 8
B
249 250parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il