Analysis of interatomic Contacts of Structural Units in PDB entry:
5K12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K12 entry

There are 6 chains in PDB entry 5K12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 53VAL 489
B
 LYS 53VAL 489
C
 LYS 53VAL 489
D
 LYS 53VAL 489
E
 LYS 53VAL 489
F
 LYS 53VAL 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 5K12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 118Right-handed alpha
Helix 2
AA2
A
132 136Right-handed 310
Helix 3
AA3
A
137 155Right-handed alpha
Helix 4
AA4
A
172 186Right-handed alpha
Helix 5
AA5
A
193 197Right-handed 310
Helix 6
AA6
A
202 206Right-handed 310
Helix 7
AA7
A
213 225Right-handed alpha
Helix 8
AA8
A
372 374Right-handed 310
Helix 9
AA9
A
375 391Right-handed alpha
Helix 10
AB1
A
398 418Right-handed alpha
Helix 11
AB2
A
433 441Right-handed alpha
Helix 12
AB3
A
444 469Right-handed alpha
Helix 13
AB4
A
477 489Right-handed alpha
Helix 14
AB5
B
100 118Right-handed alpha
Helix 15
AB6
B
132 136Right-handed 310
Helix 16
AB7
B
137 155Right-handed alpha
Helix 17
AB8
B
172 186Right-handed alpha
Helix 18
AB9
B
193 197Right-handed 310
Helix 19
AC1
B
202 206Right-handed 310
Helix 20
AC2
B
213 225Right-handed alpha
Helix 21
AC3
B
372 374Right-handed 310
Helix 22
AC4
B
375 391Right-handed alpha
Helix 23
AC5
B
398 418Right-handed alpha
Helix 24
AC6
B
433 441Right-handed alpha
Helix 25
AC7
B
444 469Right-handed alpha
Helix 26
AC8
B
477 489Right-handed alpha
Helix 27
AC9
C
100 118Right-handed alpha
Helix 28
AD1
C
132 136Right-handed 310
Helix 29
AD2
C
137 155Right-handed alpha
Helix 30
AD3
C
172 186Right-handed alpha
Helix 31
AD4
C
193 197Right-handed 310
Helix 32
AD5
C
202 206Right-handed 310
Helix 33
AD6
C
213 225Right-handed alpha
Helix 34
AD7
C
372 374Right-handed 310
Helix 35
AD8
C
375 391Right-handed alpha
Helix 36
AD9
C
398 418Right-handed alpha
Helix 37
AE1
C
433 441Right-handed alpha
Helix 38
AE2
C
444 469Right-handed alpha
Helix 39
AE3
C
477 489Right-handed alpha
Helix 40
AE4
D
100 118Right-handed alpha
Helix 41
AE5
D
132 136Right-handed 310
Helix 42
AE6
D
137 155Right-handed alpha
Helix 43
AE7
D
172 186Right-handed alpha
Helix 44
AE8
D
193 197Right-handed 310
Helix 45
AE9
D
202 206Right-handed 310
Helix 46
AF1
D
213 225Right-handed alpha
Helix 47
AF2
D
372 374Right-handed 310
Helix 48
AF3
D
375 391Right-handed alpha
Helix 49
AF4
D
398 418Right-handed alpha
Helix 50
AF5
D
433 441Right-handed alpha
Helix 51
AF6
D
444 469Right-handed alpha
Helix 52
AF7
D
477 489Right-handed alpha
Helix 53
AF8
E
100 118Right-handed alpha
Helix 54
AF9
E
132 136Right-handed 310
Helix 55
AG1
E
137 155Right-handed alpha
Helix 56
AG2
E
172 186Right-handed alpha
Helix 57
AG3
E
193 197Right-handed 310
Helix 58
AG4
E
202 206Right-handed 310
Helix 59
AG5
E
213 225Right-handed alpha
Helix 60
AG6
E
372 374Right-handed 310
Helix 61
AG7
E
375 391Right-handed alpha
Helix 62
AG8
E
398 418Right-handed alpha
Helix 63
AG9
E
433 441Right-handed alpha
Helix 64
AH1
E
444 469Right-handed alpha
Helix 65
AH2
E
477 489Right-handed alpha
Helix 66
AH3
F
100 118Right-handed alpha
Helix 67
AH4
F
132 136Right-handed 310
Helix 68
AH5
F
137 155Right-handed alpha
Helix 69
AH6
F
172 186Right-handed alpha
Helix 70
AH7
F
193 197Right-handed 310
Helix 71
AH8
F
202 206Right-handed 310
Helix 72
AH9
F
213 225Right-handed alpha
Helix 73
AI1
F
372 374Right-handed 310
Helix 74
AI2
F
375 391Right-handed alpha
Helix 75
AI3
F
398 418Right-handed alpha
Helix 76
AI4
F
433 441Right-handed alpha
Helix 77
AI5
F
444 469Right-handed alpha
Helix 78
AI6
F
477 489Right-handed alpha
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There are 3 sheets in PDB entry 5K12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
89 96parallel
Strand 3
A
123 130parallel
Strand 4
A
72 81anti-parallel
Strand 5
A
57 66anti-parallel
Strand 6
E
57 66anti-parallel
Strand 7
E
72 81anti-parallel
Strand 8
E
123 130anti-parallel
Strand 9
E
89 96parallel
Strand 10
E
163 166parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
89 96parallel
Strand 3
B
123 130parallel
Strand 4
B
72 81anti-parallel
Strand 5
B
57 66anti-parallel
Strand 6
D
57 66anti-parallel
Strand 7
D
72 81anti-parallel
Strand 8
D
123 130anti-parallel
Strand 9
D
89 96parallel
Strand 10
D
163 166parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 166first strand
Strand 2
C
89 96parallel
Strand 3
C
123 130parallel
Strand 4
C
72 81anti-parallel
Strand 5
C
57 66anti-parallel
Strand 6
F
57 66anti-parallel
Strand 7
F
72 81anti-parallel
Strand 8
F
123 130anti-parallel
Strand 9
F
89 96parallel
Strand 10
F
163 166parallel
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