Analysis of interatomic Contacts of Structural Units in PDB entry:
5K1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K1R entry

There are 2 chains in PDB entry 5K1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10PRO 472
B
 LEU 10PRO 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5K1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
29 50Right-handed alpha
Helix 3
AA3
A
61 74Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
87 104Right-handed alpha
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
125 146Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
186 194Right-handed alpha
Helix 10
AB1
A
215 226Right-handed alpha
Helix 11
AB2
A
240 247Right-handed alpha
Helix 12
AB3
A
286 291Right-handed alpha
Helix 13
AB4
A
292 294Right-handed 310
Helix 14
AB5
A
315 355Right-handed alpha
Helix 15
AB6
A
376 387Right-handed alpha
Helix 16
AB7
A
405 410Right-handed 310
Helix 17
AB8
A
412 430Right-handed alpha
Helix 18
AB9
A
456 468Right-handed alpha
Helix 19
AC1
B
13 18Right-handed alpha
Helix 20
AC2
B
29 50Right-handed alpha
Helix 21
AC3
B
61 74Right-handed alpha
Helix 22
AC4
B
82 85Right-handed 310
Helix 23
AC5
B
86 104Right-handed alpha
Helix 24
AC6
B
106 114Right-handed alpha
Helix 25
AC7
B
125 146Right-handed alpha
Helix 26
AC8
B
159 170Right-handed alpha
Helix 27
AC9
B
186 194Right-handed alpha
Helix 28
AD1
B
215 226Right-handed alpha
Helix 29
AD2
B
240 247Right-handed alpha
Helix 30
AD3
B
286 291Right-handed alpha
Helix 31
AD4
B
292 294Right-handed 310
Helix 32
AD5
B
315 355Right-handed alpha
Helix 33
AD6
B
376 387Right-handed alpha
Helix 34
AD7
B
405 410Right-handed 310
Helix 35
AD8
B
412 430Right-handed alpha
Helix 36
AD9
B
455 468Right-handed alpha
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There are 6 sheets in PDB entry 5K1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
229 233parallel
Strand 5
A
198 204parallel
Strand 6
A
151 155parallel
Strand 7
A
172 176parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
305 307anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
367 372anti-parallel
Strand 3
A
399 403anti-parallel
Strand 4
A
392 394anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
280 284anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
229 233parallel
Strand 5
B
198 204parallel
Strand 6
B
151 155parallel
Strand 7
B
172 176parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
305 307anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 360first strand
Strand 2
B
367 372anti-parallel
Strand 3
B
399 403anti-parallel
Strand 4
B
392 394anti-parallel
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