Analysis of interatomic Contacts of Structural Units in PDB entry:
5K24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K24 entry

There are 4 chains in PDB entry 5K24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3ARG 154
B
 ALA 5MET 153
C
 SER 317SER 453
D
 ARG 318LYS 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5K24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
74 92Right-handed alpha
Helix 4
AA4
A
106 119Right-handed alpha
Helix 5
AA5
A
122 134Right-handed alpha
Helix 6
AA6
A
139 149Right-handed alpha
Helix 7
AA7
B
26 38Right-handed alpha
Helix 8
AA8
B
52 58Right-handed alpha
Helix 9
AA9
B
74 92Right-handed alpha
Helix 10
AB1
B
106 119Right-handed alpha
Helix 11
AB2
B
122 134Right-handed alpha
Helix 12
AB3
B
139 149Right-handed alpha
Helix 13
AB4
C
319 324Right-handed alpha
Helix 14
AB5
C
328 330Right-handed 310
Helix 15
AB6
C
340 351Right-handed alpha
Helix 16
AB7
C
371 376Right-handed alpha
Helix 17
AB8
C
385 393Right-handed alpha
Helix 18
AB9
C
404 415Right-handed alpha
Helix 19
AC1
C
443 448Right-handed alpha
Helix 20
AC2
D
319 324Right-handed alpha
Helix 21
AC3
D
328 330Right-handed 310
Helix 22
AC4
D
340 351Right-handed alpha
Helix 23
AC5
D
371 375Right-handed alpha
Helix 24
AC6
D
385 393Right-handed alpha
Helix 25
AC7
D
404 415Right-handed alpha
Helix 26
AC8
D
443 451Right-handed alpha
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There are 8 sheets in PDB entry 5K24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
14 18anti-parallel
Strand 3
A
96 100parallel
Strand 4
A
39 44parallel
Strand 5
A
61 64parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
14 18anti-parallel
Strand 3
B
96 100parallel
Strand 4
B
39 44parallel
Strand 5
B
61 64parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 326first strand
Strand 2
C
434 442anti-parallel
Strand 3
C
419 426anti-parallel
Strand 4
C
398 400parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 334first strand
Strand 2
C
354 358parallel
Strand 3
C
365 370anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
338 339first strand
Strand 2
C
383 384anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 326first strand
Strand 2
D
434 442anti-parallel
Strand 3
D
419 426anti-parallel
Strand 4
D
398 400parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 334first strand
Strand 2
D
354 358parallel
Strand 3
D
365 370anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
338 339first strand
Strand 2
D
383 384anti-parallel
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