Analysis of interatomic Contacts of Structural Units in PDB entry:
5K25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K25 entry

There are 2 chains in PDB entry 5K25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -1LEU 155
C
 GLN 297ARG 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5K25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 25Right-handed 310
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
52 58Right-handed alpha
Helix 4
AA4
A
74 92Right-handed alpha
Helix 5
AA5
A
106 118Right-handed alpha
Helix 6
AA6
A
122 134Right-handed alpha
Helix 7
AA7
A
139 148Right-handed alpha
Helix 8
AA8
C
298 308Right-handed alpha
Helix 9
AA9
C
313 317Right-handed 310
Helix 10
AB1
C
322 324Right-handed 310
Helix 11
AB2
C
334 345Right-handed alpha
Helix 12
AB3
C
366 369Right-handed 310
Helix 13
AB4
C
378 384Right-handed alpha
Helix 14
AB5
C
398 409Right-handed alpha
Helix 15
AB6
C
437 446Right-handed alpha
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There are 3 sheets in PDB entry 5K25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
C
392 394anti-parallel
Strand 3
C
413 418parallel
Strand 4
C
430 436anti-parallel
Strand 5
C
319 320anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
96 100parallel
Strand 4
A
39 44parallel
Strand 5
A
61 64parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
327 328first strand
Strand 2
C
348 352parallel
Strand 3
C
359 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il