Analysis of interatomic Contacts of Structural Units in PDB entry:
5K36

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K36 entry

There are 13 chains in PDB entry 5K36 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLU 304
B	MET 1	ARG 239
C	ILE 10	ASN 393
D	SER 2	VAL 222
E	MET 1	LEU 265
F	ARG 8	GLN 248
G	MET 1	THR 236
H	VAL 4	GLY 356
I	GLN 6	LYS 290
J	MET 128	ILE 617
K	PRO 8	LYS 1001
M	U 11	A 17
L	U 1	A 17

There are120 helices in PDB entry 5K36. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	98	113	Right-handed alpha
Helix 4	AA4	A	120	122	Right-handed 310
Helix 5	AA5	A	146	162	Right-handed alpha
Helix 6	AA6	A	224	230	Right-handed alpha
Helix 7	AA7	A	257	290	Right-handed alpha
Helix 8	AA8	A	291	296	Right-handed 310
Helix 9	AA9	B	61	65	Right-handed 310
Helix 10	AB1	B	92	112	Right-handed alpha
Helix 11	AB2	B	113	117	Right-handed 310
Helix 12	AB3	B	134	150	Right-handed alpha
Helix 13	AB4	B	175	180	Right-handed alpha
Helix 14	AB5	B	207	238	Right-handed alpha
Helix 15	AB6	C	18	26	Right-handed alpha
Helix 16	AB7	C	26	36	Right-handed alpha
Helix 17	AB8	C	102	107	Right-handed 310
Helix 18	AB9	C	108	119	Right-handed alpha
Helix 19	AC1	C	122	125	Right-handed 310
Helix 20	AC2	C	145	162	Right-handed alpha
Helix 21	AC3	C	168	171	Right-handed 310
Helix 22	AC4	C	226	239	Right-handed alpha
Helix 23	AC5	C	321	325	Right-handed 310
Helix 24	AC6	C	335	343	Right-handed alpha
Helix 25	AC7	C	370	389	Right-handed alpha
Helix 26	AC8	D	60	75	Right-handed alpha
Helix 27	AC9	D	79	83	Right-handed 310
Helix 28	AD1	D	105	124	Right-handed alpha
Helix 29	AD2	D	150	155	Right-handed alpha
Helix 30	AD3	D	169	172	Right-handed alpha
Helix 31	AD4	D	187	221	Right-handed alpha
Helix 32	AD5	E	4	16	Right-handed alpha
Helix 33	AD6	E	89	103	Right-handed alpha
Helix 34	AD7	E	110	115	Right-handed 310
Helix 35	AD8	E	137	150	Right-handed alpha
Helix 36	AD9	E	204	208	Right-handed 310
Helix 37	AE1	E	240	263	Right-handed alpha
Helix 38	AE2	F	106	122	Right-handed alpha
Helix 39	AE3	F	126	130	Right-handed 310
Helix 40	AE4	F	163	167	Right-handed 310
Helix 41	AE5	F	168	183	Right-handed alpha
Helix 42	AE6	F	223	247	Right-handed alpha
Helix 43	AE7	G	159	168	Right-handed alpha
Helix 44	AE8	G	173	180	Right-handed alpha
Helix 45	AE9	G	200	217	Right-handed alpha
Helix 46	AF1	G	219	221	Right-handed 310
Helix 47	AF2	G	222	234	Right-handed alpha
Helix 48	AF3	H	139	141	Right-handed 310
Helix 49	AF4	H	154	160	Right-handed alpha
Helix 50	AF5	H	203	207	Right-handed 310
Helix 51	AF6	H	237	244	Right-handed alpha
Helix 52	AF7	H	290	310	Right-handed alpha
Helix 53	AF8	H	315	326	Right-handed alpha
Helix 54	AF9	H	327	330	Right-handed 310
Helix 55	AG1	H	331	336	Right-handed 310
Helix 56	AG2	H	337	354	Right-handed alpha
Helix 57	AG3	I	114	121	Right-handed alpha
Helix 58	AG4	I	123	131	Right-handed alpha
Helix 59	AG5	I	208	210	Right-handed 310
Helix 60	AG6	I	219	223	Right-handed 310
Helix 61	AG7	J	131	136	Right-handed 310
Helix 62	AG8	J	161	165	Right-handed 310
Helix 63	AG9	J	183	190	Right-handed alpha
Helix 64	AH1	J	193	198	Right-handed 310
Helix 65	AH2	J	218	230	Right-handed alpha
Helix 66	AH3	J	273	276	Right-handed 310
Helix 67	AH4	J	277	282	Right-handed alpha
Helix 68	AH5	J	295	304	Right-handed alpha
Helix 69	AH6	J	314	322	Right-handed alpha
Helix 70	AH7	J	327	335	Right-handed alpha
Helix 71	AH8	J	355	368	Right-handed alpha
Helix 72	AH9	J	368	383	Right-handed alpha
Helix 73	AI1	J	385	398	Right-handed alpha
Helix 74	AI2	J	425	432	Right-handed alpha
Helix 75	AI3	J	435	437	Right-handed 310
Helix 76	AI4	J	438	456	Right-handed alpha
Helix 77	AI5	J	459	464	Right-handed alpha
Helix 78	AI6	J	465	476	Right-handed alpha
Helix 79	AI7	J	479	485	Right-handed alpha
Helix 80	AI8	J	491	497	Right-handed alpha
Helix 81	AI9	J	497	516	Right-handed alpha
Helix 82	AJ1	J	530	538	Right-handed alpha
Helix 83	AJ2	J	541	551	Right-handed alpha
Helix 84	AJ3	J	552	556	Right-handed 310
Helix 85	AJ4	J	595	611	Right-handed alpha
Helix 86	AJ5	K	91	98	Right-handed alpha
Helix 87	AJ6	K	98	103	Right-handed alpha
Helix 88	AJ7	K	115	125	Right-handed alpha
Helix 89	AJ8	K	125	138	Right-handed alpha
Helix 90	AJ9	K	165	185	Right-handed alpha
Helix 91	AK1	K	198	208	Right-handed alpha
Helix 92	AK2	K	209	212	Right-handed 310
Helix 93	AK3	K	217	224	Right-handed alpha
Helix 94	AK4	K	227	232	Right-handed alpha
Helix 95	AK5	K	233	235	Right-handed 310
Helix 96	AK6	K	260	270	Right-handed alpha
Helix 97	AK7	K	303	308	Right-handed alpha
Helix 98	AK8	K	322	326	Right-handed 310
Helix 99	AK9	K	366	383	Right-handed alpha
Helix 100	AL1	K	409	412	Right-handed 310
Helix 101	AL2	K	476	487	Right-handed alpha
Helix 102	AL3	K	496	500	Right-handed 310
Helix 103	AL4	K	506	510	Right-handed 310
Helix 104	AL5	K	518	525	Right-handed alpha
Helix 105	AL6	K	526	531	Right-handed 310
Helix 106	AL7	K	573	576	Right-handed 310
Helix 107	AL8	K	581	591	Right-handed alpha
Helix 108	AL9	K	605	610	Right-handed alpha
Helix 109	AM1	K	654	663	Right-handed alpha
Helix 110	AM2	K	668	692	Right-handed alpha
Helix 111	AM3	K	721	746	Right-handed alpha
Helix 112	AM4	K	763	772	Right-handed alpha
Helix 113	AM5	K	782	792	Right-handed alpha
Helix 114	AM6	K	799	811	Right-handed alpha
Helix 115	AM7	K	822	824	Right-handed 310
Helix 116	AM8	K	825	830	Right-handed 310
Helix 117	AM9	K	849	862	Right-handed alpha
Helix 118	AN1	K	868	872	Right-handed 310
Helix 119	AN2	K	873	909	Right-handed alpha
Helix 120	AN3	K	947	951	Right-handed 310

There are 42 sheets in PDB entry 5K36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	76	80	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	173	176	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	256	anti-parallel
Strand 5	B	196	201	anti-parallel
Strand 6	B	183	190	anti-parallel
Strand 7	B	158	166	anti-parallel
Strand 8	B	169	172	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	256	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	K	599	601	anti-parallel
Strand 3	K	594	595	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	47	57	anti-parallel
Strand 4	B	121	130	anti-parallel
Strand 5	B	71	78	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	J	582	585	anti-parallel
Strand 3	J	591	593	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	98	anti-parallel
Strand 4	C	208	220	anti-parallel
Strand 5	C	131	136	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	98	anti-parallel
Strand 4	F	16	17	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	165	166	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	175	178	anti-parallel
Strand 3	C	242	248	parallel
Strand 4	C	275	283	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	293	301	anti-parallel
Strand 3	C	346	352	anti-parallel
Strand 4	C	356	363	anti-parallel
Strand 5	D	173	186	anti-parallel
Strand 6	D	157	168	anti-parallel
Strand 7	D	130	139	anti-parallel
Strand 8	D	145	147	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	24	34	anti-parallel
Strand 4	D	86	96	anti-parallel
Strand 5	D	46	53	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	82	first strand
Strand 2	E	120	132	parallel
Strand 3	E	57	68	anti-parallel
Strand 4	E	46	51	anti-parallel
Strand 5	E	34	38	anti-parallel
Strand 6	H	7	11	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	158	first strand
Strand 2	E	171	179	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	211	218	anti-parallel
Strand 4	E	221	227	anti-parallel
Strand 5	F	209	215	anti-parallel
Strand 6	F	199	204	anti-parallel
Strand 7	F	192	196	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	49	first strand
Strand 2	F	58	66	anti-parallel
Strand 3	F	69	82	anti-parallel
Strand 4	F	133	146	anti-parallel
Strand 5	F	92	99	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	40	44	anti-parallel
Strand 3	G	54	59	anti-parallel
Strand 4	G	20	21	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	34	36	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	149	first strand
Strand 2	G	118	125	anti-parallel
Strand 3	G	133	135	anti-parallel
Strand 4	G	95	98	parallel
Strand 5	G	83	87	anti-parallel
Strand 6	G	70	79	anti-parallel
Strand 7	G	118	125	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	193	198	anti-parallel
Strand 3	G	184	189	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	86	91	anti-parallel
Strand 3	H	94	99	anti-parallel
Strand 4	H	68	69	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	79	82	anti-parallel
Strand 3	H	73	76	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	120	first strand
Strand 2	H	123	127	anti-parallel
Strand 3	H	134	137	anti-parallel
Strand 4	H	182	185	parallel
Strand 5	H	168	176	anti-parallel
Strand 6	H	111	120	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	201	first strand
Strand 2	H	230	235	anti-parallel
Strand 3	H	221	225	anti-parallel
Strand 4	H	214	217	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	62	68	anti-parallel
Strand 3	I	105	112	anti-parallel
Strand 4	I	29	37	parallel
Strand 5	I	21	26	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	54	58	anti-parallel
Strand 3	I	41	45	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	189	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	138	146	anti-parallel
Strand 4	I	229	237	anti-parallel
Strand 5	I	253	258	anti-parallel
Strand 6	I	266	271	anti-parallel
Strand 7	I	274	276	anti-parallel
Strand 8	I	283	284	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	189	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	201	206	anti-parallel
Strand 4	I	243	246	parallel
Strand 5	I	229	237	anti-parallel
Strand 6	I	253	258	anti-parallel
Strand 7	I	266	271	anti-parallel
Strand 8	I	274	276	anti-parallel
Strand 9	I	283	284	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	214	216	first strand
Strand 2	J	262	265	parallel
Strand 3	J	250	257	anti-parallel
Strand 4	J	234	242	anti-parallel
Strand 5	J	287	290	parallel
Strand 6	J	311	313	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	400	401	first strand
Strand 2	J	415	416	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	18	28	anti-parallel
Strand 3	K	31	41	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	144	148	first strand
Strand 2	K	110	114	parallel
Strand 3	K	86	90	parallel
Strand 4	K	191	195	parallel
Strand 5	K	214	216	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	299	302	first strand
Strand 2	K	287	290	anti-parallel
Strand 3	K	273	280	anti-parallel
Strand 4	K	315	320	anti-parallel
Strand 5	K	390	397	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	402	407	first strand
Strand 2	K	420	426	anti-parallel
Strand 3	K	433	438	anti-parallel
Strand 4	K	464	473	parallel
Strand 5	K	447	455	anti-parallel
Strand 6	K	402	407	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	532	533	first strand
Strand 2	K	640	653	parallel
Strand 3	K	620	627	anti-parallel
Strand 4	K	564	571	anti-parallel
Strand 5	K	552	558	anti-parallel
Strand 6	K	539	543	anti-parallel
Strand 7	K	640	653	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	701	705	first strand
Strand 2	K	712	717	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	751	755	first strand
Strand 2	K	816	820	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	935	940	first strand
Strand 2	K	925	930	anti-parallel
Strand 3	K	913	922	anti-parallel
Strand 4	K	978	984	anti-parallel
Strand 5	K	997	998	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	952	954	first strand
Strand 2	K	959	962	anti-parallel
Strand 3	K	971	974	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K36

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K36