Analysis of interatomic Contacts of Structural Units in PDB entry:
5K3G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K3G entry

There are 4 chains in PDB entry 5K3G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ALA 669
B	VAL 2	ALA 669
C	VAL 2	ALA 669
D	VAL 2	ALA 669

There are138 helices in PDB entry 5K3G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	21	Right-handed alpha
Helix 2	AA2	A	26	36	Right-handed alpha
Helix 3	AA3	A	37	53	Right-handed alpha
Helix 4	AA4	A	54	58	Right-handed 310
Helix 5	AA5	A	62	66	Right-handed 310
Helix 6	AA6	A	67	86	Right-handed alpha
Helix 7	AA7	A	87	89	Right-handed 310
Helix 8	AA8	A	94	107	Right-handed alpha
Helix 9	AA9	A	113	119	Right-handed alpha
Helix 10	AB1	A	119	128	Right-handed alpha
Helix 11	AB2	A	129	142	Right-handed alpha
Helix 12	AB3	A	159	163	Right-handed 310
Helix 13	AB4	A	182	186	Right-handed 310
Helix 14	AB5	A	263	265	Right-handed 310
Helix 15	AB6	A	298	320	Right-handed alpha
Helix 16	AB7	A	333	336	Right-handed 310
Helix 17	AB8	A	337	367	Right-handed alpha
Helix 18	AB9	A	383	409	Right-handed alpha
Helix 19	AC1	A	410	415	Right-handed 310
Helix 20	AC2	A	419	429	Right-handed alpha
Helix 21	AC3	A	440	457	Right-handed alpha
Helix 22	AC4	A	459	463	Right-handed 310
Helix 23	AC5	A	464	472	Right-handed 310
Helix 24	AC6	A	487	516	Right-handed alpha
Helix 25	AC7	A	519	527	Right-handed alpha
Helix 26	AC8	A	527	554	Right-handed alpha
Helix 27	AC9	A	556	578	Right-handed alpha
Helix 28	AD1	A	578	584	Right-handed alpha
Helix 29	AD2	A	589	617	Right-handed alpha
Helix 30	AD3	A	621	626	Right-handed alpha
Helix 31	AD4	A	635	646	Right-handed alpha
Helix 32	AD5	A	647	651	Right-handed 310
Helix 33	AD6	A	655	661	Right-handed alpha
Helix 34	AD7	A	661	669	Right-handed alpha
Helix 35	AD8	B	13	21	Right-handed alpha
Helix 36	AD9	B	26	36	Right-handed alpha
Helix 37	AE1	B	37	53	Right-handed alpha
Helix 38	AE2	B	54	58	Right-handed 310
Helix 39	AE3	B	62	66	Right-handed 310
Helix 40	AE4	B	67	86	Right-handed alpha
Helix 41	AE5	B	87	89	Right-handed 310
Helix 42	AE6	B	96	107	Right-handed alpha
Helix 43	AE7	B	113	119	Right-handed alpha
Helix 44	AE8	B	119	128	Right-handed alpha
Helix 45	AE9	B	129	142	Right-handed alpha
Helix 46	AF1	B	159	163	Right-handed 310
Helix 47	AF2	B	171	173	Right-handed 310
Helix 48	AF3	B	182	186	Right-handed 310
Helix 49	AF4	B	263	265	Right-handed 310
Helix 50	AF5	B	298	320	Right-handed alpha
Helix 51	AF6	B	333	336	Right-handed 310
Helix 52	AF7	B	337	366	Right-handed alpha
Helix 53	AF8	B	382	409	Right-handed alpha
Helix 54	AF9	B	410	415	Right-handed 310
Helix 55	AG1	B	419	429	Right-handed alpha
Helix 56	AG2	B	439	457	Right-handed alpha
Helix 57	AG3	B	459	463	Right-handed 310
Helix 58	AG4	B	464	472	Right-handed 310
Helix 59	AG5	B	488	516	Right-handed alpha
Helix 60	AG6	B	519	527	Right-handed alpha
Helix 61	AG7	B	527	554	Right-handed alpha
Helix 62	AG8	B	556	578	Right-handed alpha
Helix 63	AG9	B	578	585	Right-handed alpha
Helix 64	AH1	B	589	617	Right-handed alpha
Helix 65	AH2	B	621	626	Right-handed alpha
Helix 66	AH3	B	635	646	Right-handed alpha
Helix 67	AH4	B	647	651	Right-handed 310
Helix 68	AH5	B	655	661	Right-handed alpha
Helix 69	AH6	B	662	669	Right-handed alpha
Helix 70	AH7	C	13	22	Right-handed alpha
Helix 71	AH8	C	26	36	Right-handed alpha
Helix 72	AH9	C	37	53	Right-handed alpha
Helix 73	AI1	C	54	58	Right-handed 310
Helix 74	AI2	C	62	66	Right-handed 310
Helix 75	AI3	C	67	86	Right-handed alpha
Helix 76	AI4	C	87	89	Right-handed 310
Helix 77	AI5	C	94	107	Right-handed alpha
Helix 78	AI6	C	113	119	Right-handed alpha
Helix 79	AI7	C	119	128	Right-handed alpha
Helix 80	AI8	C	129	142	Right-handed alpha
Helix 81	AI9	C	159	163	Right-handed 310
Helix 82	AJ1	C	182	186	Right-handed 310
Helix 83	AJ2	C	263	265	Right-handed 310
Helix 84	AJ3	C	300	320	Right-handed alpha
Helix 85	AJ4	C	333	336	Right-handed 310
Helix 86	AJ5	C	337	366	Right-handed alpha
Helix 87	AJ6	C	367	369	Right-handed 310
Helix 88	AJ7	C	384	409	Right-handed alpha
Helix 89	AJ8	C	410	415	Right-handed 310
Helix 90	AJ9	C	419	429	Right-handed alpha
Helix 91	AK1	C	439	457	Right-handed alpha
Helix 92	AK2	C	459	463	Right-handed 310
Helix 93	AK3	C	464	472	Right-handed 310
Helix 94	AK4	C	487	516	Right-handed alpha
Helix 95	AK5	C	519	527	Right-handed alpha
Helix 96	AK6	C	527	554	Right-handed alpha
Helix 97	AK7	C	556	578	Right-handed alpha
Helix 98	AK8	C	578	585	Right-handed alpha
Helix 99	AK9	C	589	617	Right-handed alpha
Helix 100	AL1	C	621	626	Right-handed alpha
Helix 101	AL2	C	635	646	Right-handed alpha
Helix 102	AL3	C	647	651	Right-handed 310
Helix 103	AL4	C	655	661	Right-handed alpha
Helix 104	AL5	C	661	669	Right-handed alpha
Helix 105	AL6	D	13	21	Right-handed alpha
Helix 106	AL7	D	26	36	Right-handed alpha
Helix 107	AL8	D	37	53	Right-handed alpha
Helix 108	AL9	D	54	58	Right-handed 310
Helix 109	AM1	D	62	66	Right-handed 310
Helix 110	AM2	D	67	86	Right-handed alpha
Helix 111	AM3	D	87	89	Right-handed 310
Helix 112	AM4	D	94	107	Right-handed alpha
Helix 113	AM5	D	113	119	Right-handed alpha
Helix 114	AM6	D	119	128	Right-handed alpha
Helix 115	AM7	D	129	142	Right-handed alpha
Helix 116	AM8	D	159	163	Right-handed 310
Helix 117	AM9	D	182	186	Right-handed 310
Helix 118	AN1	D	263	265	Right-handed 310
Helix 119	AN2	D	300	320	Right-handed alpha
Helix 120	AN3	D	333	336	Right-handed 310
Helix 121	AN4	D	337	366	Right-handed alpha
Helix 122	AN5	D	384	409	Right-handed alpha
Helix 123	AN6	D	410	415	Right-handed 310
Helix 124	AN7	D	419	429	Right-handed alpha
Helix 125	AN8	D	439	457	Right-handed alpha
Helix 126	AN9	D	459	463	Right-handed 310
Helix 127	AO1	D	464	472	Right-handed 310
Helix 128	AO2	D	488	516	Right-handed alpha
Helix 129	AO3	D	519	527	Right-handed alpha
Helix 130	AO4	D	527	554	Right-handed alpha
Helix 131	AO5	D	556	578	Right-handed alpha
Helix 132	AO6	D	578	585	Right-handed alpha
Helix 133	AO7	D	589	617	Right-handed alpha
Helix 134	AO8	D	621	626	Right-handed alpha
Helix 135	AO9	D	635	646	Right-handed alpha
Helix 136	AP1	D	647	651	Right-handed 310
Helix 137	AP2	D	655	661	Right-handed alpha
Helix 138	AP3	D	662	669	Right-handed alpha

There are 15 sheets in PDB entry 5K3G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	199	207	parallel
Strand 3	A	212	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	199	207	parallel
Strand 3	A	166	170	parallel
Strand 4	A	175	179	anti-parallel
Strand 5	A	258	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	251	255	anti-parallel
Strand 3	A	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	199	208	parallel
Strand 3	B	211	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	199	208	parallel
Strand 3	B	166	170	parallel
Strand 4	B	175	179	anti-parallel
Strand 5	B	258	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	251	255	anti-parallel
Strand 3	B	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	278	279	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	150	first strand
Strand 2	C	199	208	parallel
Strand 3	C	211	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	150	first strand
Strand 2	C	199	208	parallel
Strand 3	C	166	170	parallel
Strand 4	C	175	179	anti-parallel
Strand 5	C	258	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	251	255	anti-parallel
Strand 3	C	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	278	279	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	199	207	parallel
Strand 3	D	212	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	199	207	parallel
Strand 3	D	166	170	parallel
Strand 4	D	175	179	anti-parallel
Strand 5	D	258	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	251	255	anti-parallel
Strand 3	D	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	272	first strand
Strand 2	D	278	279	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K3G

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K3G