Analysis of interatomic Contacts of Structural Units in PDB entry:
5K3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K3J entry

There are 2 chains in PDB entry 5K3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ALA 664
B
 ALA 2HIS 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 5K3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
35 50Right-handed alpha
Helix 4
AA4
A
51 56Right-handed 310
Helix 5
AA5
A
60 64Right-handed 310
Helix 6
AA6
A
65 83Right-handed alpha
Helix 7
AA7
A
83 88Right-handed alpha
Helix 8
AA8
A
92 104Right-handed alpha
Helix 9
AA9
A
111 117Right-handed alpha
Helix 10
AB1
A
117 126Right-handed alpha
Helix 11
AB2
A
127 134Right-handed alpha
Helix 12
AB3
A
134 140Right-handed alpha
Helix 13
AB4
A
157 161Right-handed 310
Helix 14
AB5
A
261 263Right-handed 310
Helix 15
AB6
A
283 285Right-handed 310
Helix 16
AB7
A
286 316Right-handed alpha
Helix 17
AB8
A
331 334Right-handed 310
Helix 18
AB9
A
335 341Right-handed alpha
Helix 19
AC1
A
342 364Right-handed alpha
Helix 20
AC2
A
378 406Right-handed alpha
Helix 21
AC3
A
407 413Right-handed 310
Helix 22
AC4
A
417 427Right-handed alpha
Helix 23
AC5
A
428 430Right-handed 310
Helix 24
AC6
A
434 451Right-handed alpha
Helix 25
AC7
A
457 461Right-handed 310
Helix 26
AC8
A
465 469Right-handed 310
Helix 27
AC9
A
480 508Right-handed alpha
Helix 28
AD1
A
511 519Right-handed alpha
Helix 29
AD2
A
519 544Right-handed alpha
Helix 30
AD3
A
548 570Right-handed alpha
Helix 31
AD4
A
570 575Right-handed alpha
Helix 32
AD5
A
580 598Right-handed alpha
Helix 33
AD6
A
600 607Right-handed alpha
Helix 34
AD7
A
611 616Right-handed alpha
Helix 35
AD8
A
625 637Right-handed alpha
Helix 36
AD9
A
638 642Right-handed 310
Helix 37
AE1
A
645 651Right-handed alpha
Helix 38
AE2
A
651 662Right-handed alpha
Helix 39
AE3
B
11 19Right-handed alpha
Helix 40
AE4
B
24 33Right-handed alpha
Helix 41
AE5
B
35 51Right-handed alpha
Helix 42
AE6
B
52 56Right-handed 310
Helix 43
AE7
B
60 64Right-handed 310
Helix 44
AE8
B
65 88Right-handed alpha
Helix 45
AE9
B
92 104Right-handed alpha
Helix 46
AF1
B
111 117Right-handed alpha
Helix 47
AF2
B
117 126Right-handed alpha
Helix 48
AF3
B
127 140Right-handed alpha
Helix 49
AF4
B
157 161Right-handed 310
Helix 50
AF5
B
261 263Right-handed 310
Helix 51
AF6
B
283 285Right-handed 310
Helix 52
AF7
B
286 316Right-handed alpha
Helix 53
AF8
B
331 334Right-handed 310
Helix 54
AF9
B
335 341Right-handed alpha
Helix 55
AG1
B
342 366Right-handed alpha
Helix 56
AG2
B
376 406Right-handed alpha
Helix 57
AG3
B
407 413Right-handed 310
Helix 58
AG4
B
417 426Right-handed alpha
Helix 59
AG5
B
427 430Right-handed 310
Helix 60
AG6
B
434 451Right-handed alpha
Helix 61
AG7
B
457 461Right-handed 310
Helix 62
AG8
B
465 469Right-handed 310
Helix 63
AG9
B
480 508Right-handed alpha
Helix 64
AH1
B
511 519Right-handed alpha
Helix 65
AH2
B
519 544Right-handed alpha
Helix 66
AH3
B
548 570Right-handed alpha
Helix 67
AH4
B
570 575Right-handed alpha
Helix 68
AH5
B
579 598Right-handed alpha
Helix 69
AH6
B
600 607Right-handed alpha
Helix 70
AH7
B
611 616Right-handed alpha
Helix 71
AH8
B
625 636Right-handed alpha
Helix 72
AH9
B
637 642Right-handed 310
Helix 73
AI1
B
645 651Right-handed alpha
Helix 74
AI2
B
651 662Right-handed alpha
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There are 8 sheets in PDB entry 5K3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
197 205parallel
Strand 3
A
210 219anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
197 205parallel
Strand 3
A
164 168parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
256 259anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
232 236anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
276 277anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
197 204parallel
Strand 3
B
212 219anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 168first strand
Strand 2
B
173 177anti-parallel
Strand 3
B
256 259anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
248 253anti-parallel
Strand 3
B
232 236anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
276 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il