Analysis of interatomic Contacts of Structural Units in PDB entry:
5K3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K3M entry

There are 2 chains in PDB entry 5K3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 265PHE 486
B
 ALA 265PHE 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5K3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 284Right-handed alpha
Helix 2
AA2
A
288 295Right-handed alpha
Helix 3
AA3
A
301 311Right-handed alpha
Helix 4
AA4
A
312 337Right-handed alpha
Helix 5
AA5
A
345 365Right-handed alpha
Helix 6
AA6
A
384 392Right-handed 310
Helix 7
AA7
A
393 409Right-handed alpha
Helix 8
AA8
A
413 426Right-handed alpha
Helix 9
AA9
A
435 457Right-handed alpha
Helix 10
AB1
A
459 466Right-handed 310
Helix 11
AB2
A
468 484Right-handed alpha
Helix 12
AB3
B
266 284Right-handed alpha
Helix 13
AB4
B
288 295Right-handed alpha
Helix 14
AB5
B
301 311Right-handed alpha
Helix 15
AB6
B
312 337Right-handed alpha
Helix 16
AB7
B
345 368Right-handed alpha
Helix 17
AB8
B
386 392Right-handed 310
Helix 18
AB9
B
393 409Right-handed alpha
Helix 19
AC1
B
413 426Right-handed alpha
Helix 20
AC2
B
435 458Right-handed alpha
Helix 21
AC3
B
459 464Right-handed 310
Helix 22
AC4
B
470 478Right-handed alpha
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There are 2 sheets in PDB entry 5K3M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
381 383anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 370first strand
Strand 2
B
375 378anti-parallel
Strand 3
B
381 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il