Analysis of interatomic Contacts of Structural Units in PDB entry:
5K44


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K44 entry

There is 1 chain in PDB entry 5K44 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5K44. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
92 97Right-handed alpha
Helix 5
AA5
A
97 103Right-handed alpha
Helix 6
AA6
A
112 133Right-handed alpha
Helix 7
AA7
A
145 148Right-handed 310
Helix 8
AA8
A
149 158Right-handed alpha
Helix 9
AA9
A
173 178Right-handed alpha
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
200 214Right-handed alpha
Helix 12
AB3
A
250 259Right-handed alpha
Helix 13
AB4
A
260 274Right-handed alpha
Helix 14
AB5
A
288 291Right-handed 310
Helix 15
AB6
A
292 306Right-handed alpha
Helix 16
AB7
A
327 349Right-handed alpha
Helix 17
AB8
A
364 375Right-handed alpha
Helix 18
AB9
A
388 398Right-handed alpha
Helix 19
AC1
A
411 416Right-handed 310
Helix 20
AC2
A
427 441Right-handed alpha
Helix 21
AC3
A
442 460Right-handed alpha
Helix 22
AC4
A
461 475Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5K44. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
53 58parallel
Strand 4
A
10 18parallel
Strand 5
A
134 143parallel
Strand 6
A
162 166parallel
Strand 7
A
195 198parallel
Strand 8
A
238 244parallel
Strand 9
A
231 235anti-parallel
Strand 10
A
218 219anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 360first strand
Strand 2
A
314 321parallel
Strand 3
A
279 286parallel
Strand 4
A
377 380parallel
Strand 5
A
405 408parallel
Strand 6
A
421 423parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il