Analysis of interatomic Contacts of Structural Units in PDB entry:
5K4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K4D entry

There are 2 chains in PDB entry 5K4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 172THR 536
B
 ASP 178ASP 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5K4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 192Right-handed alpha
Helix 2
AA2
A
214 220Right-handed 310
Helix 3
AA3
A
221 225Right-handed 310
Helix 4
AA4
A
239 242Right-handed 310
Helix 5
AA5
A
243 250Right-handed alpha
Helix 6
AA6
A
260 268Right-handed alpha
Helix 7
AA7
A
269 272Right-handed 310
Helix 8
AA8
A
295 299Right-handed 310
Helix 9
AA9
A
319 338Right-handed alpha
Helix 10
AB1
A
410 415Right-handed alpha
Helix 11
AB2
A
418 423Right-handed alpha
Helix 12
AB3
A
426 438Right-handed alpha
Helix 13
AB4
A
438 453Right-handed alpha
Helix 14
AB5
A
482 490Right-handed alpha
Helix 15
AB6
A
493 510Right-handed alpha
Helix 16
AB7
B
187 191Right-handed alpha
Helix 17
AB8
B
214 220Right-handed 310
Helix 18
AB9
B
221 225Right-handed 310
Helix 19
AC1
B
239 242Right-handed 310
Helix 20
AC2
B
243 251Right-handed alpha
Helix 21
AC3
B
260 268Right-handed alpha
Helix 22
AC4
B
269 272Right-handed 310
Helix 23
AC5
B
295 299Right-handed 310
Helix 24
AC6
B
319 338Right-handed alpha
Helix 25
AC7
B
418 423Right-handed alpha
Helix 26
AC8
B
426 438Right-handed alpha
Helix 27
AC9
B
438 453Right-handed alpha
Helix 28
AD1
B
482 490Right-handed alpha
Helix 29
AD2
B
493 510Right-handed alpha
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There are 4 sheets in PDB entry 5K4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 186first strand
Strand 2
A
526 531anti-parallel
Strand 3
A
514 520anti-parallel
Strand 4
A
277 283anti-parallel
Strand 5
A
286 290anti-parallel
Strand 6
A
256 259parallel
Strand 7
A
380 387parallel
Strand 8
A
366 374anti-parallel
Strand 9
A
202 210anti-parallel
Strand 10
A
346 347anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
473 481anti-parallel
Strand 3
A
456 464anti-parallel
Strand 4
A
399 408parallel
Strand 5
A
389 391anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 186first strand
Strand 2
B
526 531anti-parallel
Strand 3
B
514 520anti-parallel
Strand 4
B
277 283anti-parallel
Strand 5
B
286 290anti-parallel
Strand 6
B
256 259parallel
Strand 7
B
380 387parallel
Strand 8
B
366 374anti-parallel
Strand 9
B
202 210anti-parallel
Strand 10
B
346 347anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
469 481anti-parallel
Strand 3
B
456 466anti-parallel
Strand 4
B
398 408parallel
Strand 5
B
389 392anti-parallel
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