Analysis of interatomic Contacts of Structural Units in PDB entry:
5K4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K4H entry

There are 8 chains in PDB entry 5K4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	TYR 330
B	LYS 3	TYR 330
C	LYS 3	TYR 330
D	LYS 3	TYR 330
E	LYS 3	TYR 330
F	LYS 3	TYR 330
G	LYS 3	TYR 330
H	LYS 3	TYR 330

There are104 helices in PDB entry 5K4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	43	48	Right-handed alpha
Helix 3	AA3	A	59	63	Right-handed 310
Helix 4	AA4	A	64	81	Right-handed alpha
Helix 5	AA5	A	95	107	Right-handed alpha
Helix 6	AA6	A	128	142	Right-handed alpha
Helix 7	AA7	A	143	146	Right-handed 310
Helix 8	AA8	A	201	205	Right-handed 310
Helix 9	AA9	A	229	238	Right-handed alpha
Helix 10	AB1	A	254	267	Right-handed alpha
Helix 11	AB2	A	289	294	Right-handed alpha
Helix 12	AB3	A	302	314	Right-handed alpha
Helix 13	AB4	A	319	330	Right-handed alpha
Helix 14	AB5	B	31	41	Right-handed alpha
Helix 15	AB6	B	43	48	Right-handed alpha
Helix 16	AB7	B	59	63	Right-handed 310
Helix 17	AB8	B	64	81	Right-handed alpha
Helix 18	AB9	B	95	107	Right-handed alpha
Helix 19	AC1	B	128	141	Right-handed alpha
Helix 20	AC2	B	142	146	Right-handed 310
Helix 21	AC3	B	201	205	Right-handed 310
Helix 22	AC4	B	229	238	Right-handed alpha
Helix 23	AC5	B	254	267	Right-handed alpha
Helix 24	AC6	B	289	294	Right-handed alpha
Helix 25	AC7	B	302	314	Right-handed alpha
Helix 26	AC8	B	319	328	Right-handed alpha
Helix 27	AC9	C	32	41	Right-handed alpha
Helix 28	AD1	C	43	48	Right-handed alpha
Helix 29	AD2	C	59	63	Right-handed 310
Helix 30	AD3	C	64	81	Right-handed alpha
Helix 31	AD4	C	95	107	Right-handed alpha
Helix 32	AD5	C	128	142	Right-handed alpha
Helix 33	AD6	C	143	146	Right-handed 310
Helix 34	AD7	C	201	205	Right-handed 310
Helix 35	AD8	C	229	238	Right-handed alpha
Helix 36	AD9	C	254	267	Right-handed alpha
Helix 37	AE1	C	289	294	Right-handed alpha
Helix 38	AE2	C	302	314	Right-handed alpha
Helix 39	AE3	C	319	328	Right-handed alpha
Helix 40	AE4	D	31	41	Right-handed alpha
Helix 41	AE5	D	43	48	Right-handed alpha
Helix 42	AE6	D	59	63	Right-handed 310
Helix 43	AE7	D	64	81	Right-handed alpha
Helix 44	AE8	D	95	107	Right-handed alpha
Helix 45	AE9	D	128	142	Right-handed alpha
Helix 46	AF1	D	143	146	Right-handed 310
Helix 47	AF2	D	201	205	Right-handed 310
Helix 48	AF3	D	229	238	Right-handed alpha
Helix 49	AF4	D	254	267	Right-handed alpha
Helix 50	AF5	D	289	294	Right-handed alpha
Helix 51	AF6	D	302	314	Right-handed alpha
Helix 52	AF7	D	319	328	Right-handed alpha
Helix 53	AF8	E	31	41	Right-handed alpha
Helix 54	AF9	E	43	48	Right-handed alpha
Helix 55	AG1	E	59	63	Right-handed 310
Helix 56	AG2	E	64	81	Right-handed alpha
Helix 57	AG3	E	95	107	Right-handed alpha
Helix 58	AG4	E	128	142	Right-handed alpha
Helix 59	AG5	E	143	146	Right-handed 310
Helix 60	AG6	E	201	205	Right-handed 310
Helix 61	AG7	E	229	238	Right-handed alpha
Helix 62	AG8	E	254	267	Right-handed alpha
Helix 63	AG9	E	289	294	Right-handed alpha
Helix 64	AH1	E	302	314	Right-handed alpha
Helix 65	AH2	E	319	328	Right-handed alpha
Helix 66	AH3	F	31	41	Right-handed alpha
Helix 67	AH4	F	43	48	Right-handed alpha
Helix 68	AH5	F	59	63	Right-handed 310
Helix 69	AH6	F	64	81	Right-handed alpha
Helix 70	AH7	F	95	107	Right-handed alpha
Helix 71	AH8	F	128	141	Right-handed alpha
Helix 72	AH9	F	142	146	Right-handed 310
Helix 73	AI1	F	201	205	Right-handed 310
Helix 74	AI2	F	229	238	Right-handed alpha
Helix 75	AI3	F	254	267	Right-handed alpha
Helix 76	AI4	F	289	294	Right-handed alpha
Helix 77	AI5	F	302	314	Right-handed alpha
Helix 78	AI6	F	319	330	Right-handed alpha
Helix 79	AI7	G	31	41	Right-handed alpha
Helix 80	AI8	G	43	48	Right-handed alpha
Helix 81	AI9	G	59	63	Right-handed 310
Helix 82	AJ1	G	64	81	Right-handed alpha
Helix 83	AJ2	G	95	107	Right-handed alpha
Helix 84	AJ3	G	128	142	Right-handed alpha
Helix 85	AJ4	G	143	146	Right-handed 310
Helix 86	AJ5	G	201	205	Right-handed 310
Helix 87	AJ6	G	229	238	Right-handed alpha
Helix 88	AJ7	G	254	267	Right-handed alpha
Helix 89	AJ8	G	289	294	Right-handed alpha
Helix 90	AJ9	G	302	314	Right-handed alpha
Helix 91	AK1	G	319	328	Right-handed alpha
Helix 92	AK2	H	31	41	Right-handed alpha
Helix 93	AK3	H	43	48	Right-handed alpha
Helix 94	AK4	H	59	63	Right-handed 310
Helix 95	AK5	H	64	81	Right-handed alpha
Helix 96	AK6	H	95	107	Right-handed alpha
Helix 97	AK7	H	128	141	Right-handed alpha
Helix 98	AK8	H	142	146	Right-handed 310
Helix 99	AK9	H	201	205	Right-handed 310
Helix 100	AL1	H	229	238	Right-handed alpha
Helix 101	AL2	H	254	267	Right-handed alpha
Helix 102	AL3	H	289	294	Right-handed alpha
Helix 103	AL4	H	302	314	Right-handed alpha
Helix 104	AL5	H	319	328	Right-handed alpha

There are 28 sheets in PDB entry 5K4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	5	10	parallel
Strand 3	A	84	90	parallel
Strand 4	A	113	116	parallel
Strand 5	A	151	154	parallel
Strand 6	A	157	160	anti-parallel
Strand 7	A	184	187	anti-parallel
Strand 8	A	190	193	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	175	176	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	C	195	197	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	242	247	parallel
Strand 3	A	270	275	parallel
Strand 4	A	295	297	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	54	first strand
Strand 2	B	5	10	parallel
Strand 3	B	84	90	parallel
Strand 4	B	113	116	parallel
Strand 5	B	151	154	parallel
Strand 6	B	157	160	anti-parallel
Strand 7	B	184	187	anti-parallel
Strand 8	B	190	193	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	D	195	197	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	222	first strand
Strand 2	B	242	247	parallel
Strand 3	B	270	275	parallel
Strand 4	B	295	297	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	58	first strand
Strand 2	C	5	12	parallel
Strand 3	C	86	90	parallel
Strand 4	C	113	116	parallel
Strand 5	C	151	154	parallel
Strand 6	C	157	160	anti-parallel
Strand 7	C	184	187	anti-parallel
Strand 8	C	190	193	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	175	176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	242	247	parallel
Strand 3	C	270	275	parallel
Strand 4	C	295	297	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	54	first strand
Strand 2	D	5	10	parallel
Strand 3	D	84	90	parallel
Strand 4	D	113	116	parallel
Strand 5	D	151	154	parallel
Strand 6	D	157	160	anti-parallel
Strand 7	D	184	187	anti-parallel
Strand 8	D	190	193	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	166	first strand
Strand 2	D	175	176	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	222	first strand
Strand 2	D	242	247	parallel
Strand 3	D	270	275	parallel
Strand 4	D	295	297	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	54	first strand
Strand 2	E	5	10	parallel
Strand 3	E	84	90	parallel
Strand 4	E	113	116	parallel
Strand 5	E	151	154	parallel
Strand 6	E	157	160	anti-parallel
Strand 7	E	184	187	anti-parallel
Strand 8	E	190	193	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	166	first strand
Strand 2	E	175	176	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	197	first strand
Strand 2	G	195	197	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	222	first strand
Strand 2	E	242	247	parallel
Strand 3	E	270	275	parallel
Strand 4	E	295	297	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	54	first strand
Strand 2	F	5	10	parallel
Strand 3	F	84	90	parallel
Strand 4	F	113	116	parallel
Strand 5	F	151	154	parallel
Strand 6	F	157	160	anti-parallel
Strand 7	F	184	187	anti-parallel
Strand 8	F	190	193	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	166	first strand
Strand 2	F	175	176	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	197	first strand
Strand 2	H	195	197	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	222	first strand
Strand 2	F	242	247	parallel
Strand 3	F	270	275	parallel
Strand 4	F	295	297	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	54	first strand
Strand 2	G	5	10	parallel
Strand 3	G	84	90	parallel
Strand 4	G	113	116	parallel
Strand 5	G	151	154	parallel
Strand 6	G	157	160	anti-parallel
Strand 7	G	184	187	anti-parallel
Strand 8	G	190	193	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	166	first strand
Strand 2	G	175	176	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	222	first strand
Strand 2	G	242	247	parallel
Strand 3	G	270	275	parallel
Strand 4	G	295	297	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	54	first strand
Strand 2	H	5	10	parallel
Strand 3	H	84	90	parallel
Strand 4	H	113	116	parallel
Strand 5	H	151	154	parallel
Strand 6	H	157	160	anti-parallel
Strand 7	H	184	187	anti-parallel
Strand 8	H	190	193	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	166	first strand
Strand 2	H	175	176	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	222	first strand
Strand 2	H	242	247	parallel
Strand 3	H	270	275	parallel
Strand 4	H	295	297	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K4H