Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5B entry

There is 1 chain in PDB entry 5K5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7LEU 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5K5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
57 63Right-handed alpha
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
73 78Right-handed alpha
Helix 6
AA6
A
81 89Right-handed alpha
Helix 7
AA7
A
141 150Right-handed alpha
Helix 8
AA8
A
152 169Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
257 267Right-handed alpha
Helix 12
AB3
A
298 322Right-handed alpha
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There are 2 sheets in PDB entry 5K5B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
A
121 129anti-parallel
Strand 6
A
110 118anti-parallel
Strand 7
A
99 103anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
184 191anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
271 279anti-parallel
Strand 6
A
221 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il