Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5C entry

There is 1 chain in PDB entry 5K5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5K5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
92 97Right-handed alpha
Helix 5
AA5
A
97 103Right-handed alpha
Helix 6
AA6
A
112 133Right-handed alpha
Helix 7
AA7
A
145 148Right-handed 310
Helix 8
AA8
A
149 158Right-handed alpha
Helix 9
AA9
A
173 178Right-handed alpha
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
200 214Right-handed alpha
Helix 12
AB3
A
250 259Right-handed alpha
Helix 13
AB4
A
260 274Right-handed alpha
Helix 14
AB5
A
292 306Right-handed alpha
Helix 15
AB6
A
327 349Right-handed alpha
Helix 16
AB7
A
364 375Right-handed alpha
Helix 17
AB8
A
388 398Right-handed alpha
Helix 18
AB9
A
411 416Right-handed 310
Helix 19
AC1
A
427 441Right-handed alpha
Helix 20
AC2
A
442 460Right-handed alpha
Helix 21
AC3
A
461 475Right-handed alpha
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There are 3 sheets in PDB entry 5K5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
53 58parallel
Strand 4
A
10 18parallel
Strand 5
A
134 143parallel
Strand 6
A
162 166parallel
Strand 7
A
195 198parallel
Strand 8
A
238 244parallel
Strand 9
A
231 235anti-parallel
Strand 10
A
218 219anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
34 35anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 360first strand
Strand 2
A
314 321parallel
Strand 3
A
279 286parallel
Strand 4
A
377 380parallel
Strand 5
A
405 408parallel
Strand 6
A
421 423parallel
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