Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5K entry

There is 1 chain in PDB entry 5K5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24GLY 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5K5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 148Right-handed alpha
Helix 2
AA2
A
158 162Right-handed 310
Helix 3
AA3
A
163 168Right-handed alpha
Helix 4
AA4
A
190 197Right-handed alpha
Helix 5
AA5
A
447 453Right-handed alpha
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There are 9 sheets in PDB entry 5K5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
71 74parallel
Strand 3
A
152 156parallel
Strand 4
A
130 135anti-parallel
Strand 5
A
95 97anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 63first strand
Strand 2
A
39 53anti-parallel
Strand 3
A
79 86parallel
Strand 4
A
117 123anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
219 226parallel
Strand 5
A
268 274anti-parallel
Strand 6
A
242 247anti-parallel
Strand 7
A
250 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
185 186anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
313 319parallel
Strand 3
A
280 286anti-parallel
Strand 4
A
233 237anti-parallel
Strand 5
A
261 263anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
303 306anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
380 387parallel
Strand 4
A
428 434anti-parallel
Strand 5
A
402 407anti-parallel
Strand 6
A
410 411anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
380 387parallel
Strand 4
A
428 434anti-parallel
Strand 5
A
402 407anti-parallel
Strand 6
A
417 418anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
456 461parallel
Strand 3
A
439 445anti-parallel
Strand 4
A
393 397anti-parallel
Strand 5
A
420 423anti-parallel
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