Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5M entry

There is 1 chain in PDB entry 5K5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 273PHE 889
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5K5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
273 288Right-handed alpha
Helix 2
AA2
A
322 328Right-handed alpha
Helix 3
AA3
A
329 334Right-handed 310
Helix 4
AA4
A
335 340Right-handed alpha
Helix 5
AA5
A
341 343Right-handed 310
Helix 6
AA6
A
367 387Right-handed alpha
Helix 7
AA7
A
395 404Right-handed alpha
Helix 8
AA8
A
421 428Right-handed alpha
Helix 9
AA9
A
428 443Right-handed alpha
Helix 10
AB1
A
478 490Right-handed alpha
Helix 11
AB2
A
490 495Right-handed alpha
Helix 12
AB3
A
499 504Right-handed alpha
Helix 13
AB4
A
511 524Right-handed alpha
Helix 14
AB5
A
537 542Right-handed 310
Helix 15
AB6
A
543 552Right-handed alpha
Helix 16
AB7
A
553 557Right-handed 310
Helix 17
AB8
A
558 573Right-handed alpha
Helix 18
AB9
A
607 626Right-handed alpha
Helix 19
AC1
A
636 656Right-handed alpha
Helix 20
AC2
A
671 677Right-handed 310
Helix 21
AC3
A
678 684Right-handed alpha
Helix 22
AC4
A
730 739Right-handed alpha
Helix 23
AC5
A
747 766Right-handed alpha
Helix 24
AC6
A
769 783Right-handed alpha
Helix 25
AC7
A
808 818Right-handed alpha
Helix 26
AC8
A
832 836Right-handed 310
Helix 27
AC9
A
840 847Right-handed alpha
Helix 28
AD1
A
853 862Right-handed alpha
Helix 29
AD2
A
862 875Right-handed alpha
Helix 30
AD3
A
882 886Right-handed 310
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There are 4 sheets in PDB entry 5K5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 310first strand
Strand 2
A
589 595anti-parallel
Strand 3
A
576 582anti-parallel
Strand 4
A
452 454parallel
Strand 5
A
475 476anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
740 741anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
664 667anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il