Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5T entry

There is 1 chain in PDB entry 5K5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21ILE 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5K5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 84Right-handed alpha
Helix 2
AA2
A
103 116Right-handed alpha
Helix 3
AA3
A
119 124Right-handed alpha
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
146 158Right-handed alpha
Helix 6
AA6
A
159 161Right-handed 310
Helix 7
AA7
A
171 176Right-handed 310
Helix 8
AA8
A
191 204Right-handed alpha
Helix 9
AA9
A
218 233Right-handed alpha
Helix 10
AB1
A
248 262Right-handed alpha
Helix 11
AB2
A
272 287Right-handed alpha
Helix 12
AB3
A
296 301Right-handed alpha
Helix 13
AB4
A
307 309Right-handed 310
Helix 14
AB5
A
310 315Right-handed alpha
Helix 15
AB6
A
329 336Right-handed alpha
Helix 16
AB7
A
346 357Right-handed alpha
Helix 17
AB8
A
373 379Right-handed 310
Helix 18
AB9
A
386 390Right-handed 310
Helix 19
AC1
A
415 437Right-handed alpha
Helix 20
AC2
A
456 466Right-handed alpha
Helix 21
AC3
A
525 528Right-handed 310
Helix 22
AC4
A
529 533Right-handed 310
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There are 7 sheets in PDB entry 5K5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
32 38parallel
Strand 4
A
138 142parallel
Strand 5
A
164 166parallel
Strand 6
A
183 185parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 243first strand
Strand 2
A
208 214parallel
Strand 3
A
266 270parallel
Strand 4
A
292 295parallel
Strand 5
A
318 322parallel
Strand 6
A
488 496anti-parallel
Strand 7
A
503 512anti-parallel
Strand 8
A
521 523anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
394 395parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 470first strand
Strand 2
A
476 478anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 554first strand
Strand 2
A
563 567anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
583 584anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 591first strand
Strand 2
A
598 600anti-parallel
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