Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5V entry

There is 1 chain in PDB entry 5K5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13ARG 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5K5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 49Right-handed alpha
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
79 81Right-handed 310
Helix 4
AA4
A
87 101Right-handed alpha
Helix 5
AA5
A
140 145Right-handed alpha
Helix 6
AA6
A
186 191Right-handed 310
Helix 7
AA7
A
192 196Right-handed 310
Helix 8
AA8
A
198 201Right-handed 310
Helix 9
AA9
A
202 211Right-handed alpha
Helix 10
AB1
A
230 235Right-handed alpha
Helix 11
AB2
A
236 254Right-handed alpha
Helix 12
AB3
A
294 304Right-handed alpha
Helix 13
AB4
A
305 309Right-handed 310
Helix 14
AB5
A
313 320Right-handed alpha
Helix 15
AB6
A
323 330Right-handed alpha
Helix 16
AB7
A
337 341Right-handed 310
Helix 17
AB8
A
351 355Right-handed 310
Helix 18
AB9
A
360 366Right-handed alpha
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There are 3 sheets in PDB entry 5K5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
117 124anti-parallel
Strand 3
A
103 111anti-parallel
Strand 4
A
58 60parallel
Strand 5
A
14 25parallel
Strand 6
A
445 456anti-parallel
Strand 7
A
266 269parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
117 124anti-parallel
Strand 3
A
103 111anti-parallel
Strand 4
A
58 60parallel
Strand 5
A
14 25parallel
Strand 6
A
157 167anti-parallel
Strand 7
A
176 184anti-parallel
Strand 8
A
215 220parallel
Strand 9
A
384 390parallel
Strand 10
A
406 410anti-parallel
Strand 11
A
433 438anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
399 400anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il