Analysis of interatomic Contacts of Structural Units in PDB entry:
5K5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K5Z entry

There are 4 chains in PDB entry 5K5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2GLN 315
B
 ILE 2GLN 315
C
 ILE 2GLN 315
D
 ILE 2GLN 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5K5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
44 51Right-handed alpha
Helix 3
AA3
A
52 64Right-handed alpha
Helix 4
AA4
A
71 78Right-handed 310
Helix 5
AA5
A
103 112Right-handed alpha
Helix 6
AA6
A
122 128Right-handed alpha
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
149 156Right-handed alpha
Helix 9
AA9
A
167 181Right-handed alpha
Helix 10
AB1
A
181 186Right-handed alpha
Helix 11
AB2
A
213 229Right-handed alpha
Helix 12
AB3
A
248 252Right-handed 310
Helix 13
AB4
A
257 262Right-handed alpha
Helix 14
AB5
A
272 280Right-handed alpha
Helix 15
AB6
A
281 283Right-handed 310
Helix 16
AB7
A
289 313Right-handed alpha
Helix 17
AB8
B
16 31Right-handed alpha
Helix 18
AB9
B
44 51Right-handed alpha
Helix 19
AC1
B
52 63Right-handed alpha
Helix 20
AC2
B
71 76Right-handed 310
Helix 21
AC3
B
103 113Right-handed alpha
Helix 22
AC4
B
122 129Right-handed alpha
Helix 23
AC5
B
130 132Right-handed 310
Helix 24
AC6
B
146 156Right-handed alpha
Helix 25
AC7
B
167 180Right-handed alpha
Helix 26
AC8
B
180 186Right-handed alpha
Helix 27
AC9
B
213 229Right-handed alpha
Helix 28
AD1
B
230 235Right-handed 310
Helix 29
AD2
B
248 252Right-handed 310
Helix 30
AD3
B
272 282Right-handed alpha
Helix 31
AD4
B
298 315Right-handed alpha
Helix 32
AD5
C
16 31Right-handed alpha
Helix 33
AD6
C
44 51Right-handed alpha
Helix 34
AD7
C
54 60Right-handed alpha
Helix 35
AD8
C
71 76Right-handed 310
Helix 36
AD9
C
103 113Right-handed alpha
Helix 37
AE1
C
122 129Right-handed alpha
Helix 38
AE2
C
149 156Right-handed alpha
Helix 39
AE3
C
167 180Right-handed alpha
Helix 40
AE4
C
180 185Right-handed alpha
Helix 41
AE5
C
211 228Right-handed alpha
Helix 42
AE6
C
248 253Right-handed 310
Helix 43
AE7
C
272 281Right-handed alpha
Helix 44
AE8
C
301 313Right-handed alpha
Helix 45
AE9
D
16 31Right-handed alpha
Helix 46
AF1
D
46 51Right-handed alpha
Helix 47
AF2
D
52 63Right-handed alpha
Helix 48
AF3
D
64 69Right-handed 310
Helix 49
AF4
D
71 76Right-handed 310
Helix 50
AF5
D
103 112Right-handed alpha
Helix 51
AF6
D
122 128Right-handed alpha
Helix 52
AF7
D
129 131Right-handed 310
Helix 53
AF8
D
149 156Right-handed alpha
Helix 54
AF9
D
167 181Right-handed alpha
Helix 55
AG1
D
181 186Right-handed alpha
Helix 56
AG2
D
212 229Right-handed alpha
Helix 57
AG3
D
230 235Right-handed 310
Helix 58
AG4
D
248 253Right-handed 310
Helix 59
AG5
D
257 262Right-handed alpha
Helix 60
AG6
D
272 280Right-handed alpha
Helix 61
AG7
D
281 283Right-handed 310
Helix 62
AG8
D
289 301Right-handed alpha
Helix 63
AG9
D
301 315Right-handed alpha
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There are 4 sheets in PDB entry 5K5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 90first strand
Strand 2
A
93 100anti-parallel
Strand 3
A
35 39parallel
Strand 4
A
137 141parallel
Strand 5
A
4 8parallel
Strand 6
A
159 164parallel
Strand 7
A
199 205parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
93 100anti-parallel
Strand 3
B
35 40parallel
Strand 4
B
137 142parallel
Strand 5
B
4 8parallel
Strand 6
B
159 164parallel
Strand 7
B
199 205parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 90first strand
Strand 2
C
93 100anti-parallel
Strand 3
C
35 40parallel
Strand 4
C
137 142parallel
Strand 5
C
4 8parallel
Strand 6
C
159 164parallel
Strand 7
C
199 205parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 90first strand
Strand 2
D
93 100anti-parallel
Strand 3
D
35 40parallel
Strand 4
D
137 142parallel
Strand 5
D
4 8parallel
Strand 6
D
159 164parallel
Strand 7
D
199 205parallel
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