Analysis of interatomic Contacts of Structural Units in PDB entry:
5K7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K7T entry

There is 1 chain in PDB entry 5K7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 233LYS 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5K7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
298 320Right-handed alpha
Helix 2
AA2
A
364 367Right-handed 310
Helix 3
AA3
A
368 384Right-handed alpha
Helix 4
AA4
A
390 413Right-handed alpha
Helix 5
AA5
A
439 444Right-handed 310
Helix 6
AA6
A
448 452Right-handed 310
Helix 7
AA7
A
457 462Right-handed alpha
Helix 8
AA8
A
465 478Right-handed alpha
Helix 9
AA9
A
491 506Right-handed alpha
Helix 10
AB1
A
512 529Right-handed alpha
Helix 11
AB2
A
532 545Right-handed alpha
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There are 5 sheets in PDB entry 5K7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
260 261anti-parallel
Strand 3
A
249 256anti-parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
293 294parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
285 286anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
332 338parallel
Strand 4
A
352 355parallel
Strand 5
A
345 347anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
435 436anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 482first strand
Strand 2
A
485 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il