Analysis of interatomic Contacts of Structural Units in PDB entry:
5K7X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K7X entry

There are 4 chains in PDB entry 5K7X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	THR 338
B	PRO 2	THR 338
C	PRO 2	THR 338
D	PRO 2	LYS 287

There are104 helices in PDB entry 5K7X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	28	Right-handed alpha
Helix 2	AA2	A	77	88	Right-handed alpha
Helix 3	AA3	A	89	92	Right-handed 310
Helix 4	AA4	A	107	117	Right-handed alpha
Helix 5	AA5	A	117	123	Right-handed alpha
Helix 6	AA6	A	130	140	Right-handed alpha
Helix 7	AA7	A	145	154	Right-handed 310
Helix 8	AA8	A	158	169	Right-handed alpha
Helix 9	AA9	A	180	184	Right-handed 310
Helix 10	AB1	A	199	208	Right-handed alpha
Helix 11	AB2	A	210	214	Right-handed 310
Helix 12	AB3	A	238	245	Right-handed alpha
Helix 13	AB4	A	264	275	Right-handed alpha
Helix 14	AB5	A	284	289	Right-handed alpha
Helix 15	AB6	A	290	293	Right-handed 310
Helix 16	AB7	A	297	301	Right-handed 310
Helix 17	AB8	A	302	317	Right-handed alpha
Helix 18	AB9	B	15	28	Right-handed alpha
Helix 19	AC1	B	77	88	Right-handed alpha
Helix 20	AC2	B	89	91	Right-handed 310
Helix 21	AC3	B	92	96	Right-handed alpha
Helix 22	AC4	B	107	117	Right-handed alpha
Helix 23	AC5	B	130	140	Right-handed alpha
Helix 24	AC6	B	145	154	Right-handed 310
Helix 25	AC7	B	158	169	Right-handed alpha
Helix 26	AC8	B	180	184	Right-handed 310
Helix 27	AC9	B	199	208	Right-handed alpha
Helix 28	AD1	B	210	214	Right-handed 310
Helix 29	AD2	B	238	245	Right-handed alpha
Helix 30	AD3	B	264	275	Right-handed alpha
Helix 31	AD4	B	284	289	Right-handed alpha
Helix 32	AD5	B	290	293	Right-handed 310
Helix 33	AD6	B	297	301	Right-handed 310
Helix 34	AD7	B	302	317	Right-handed alpha
Helix 35	AD8	C	15	28	Right-handed alpha
Helix 36	AD9	C	77	88	Right-handed alpha
Helix 37	AE1	C	89	91	Right-handed 310
Helix 38	AE2	C	92	96	Right-handed alpha
Helix 39	AE3	C	107	117	Right-handed alpha
Helix 40	AE4	C	117	123	Right-handed alpha
Helix 41	AE5	C	130	140	Right-handed alpha
Helix 42	AE6	C	145	149	Right-handed 310
Helix 43	AE7	C	152	154	Right-handed 310
Helix 44	AE8	C	158	169	Right-handed alpha
Helix 45	AE9	C	180	184	Right-handed 310
Helix 46	AF1	C	199	208	Right-handed alpha
Helix 47	AF2	C	210	214	Right-handed 310
Helix 48	AF3	C	238	245	Right-handed alpha
Helix 49	AF4	C	264	275	Right-handed alpha
Helix 50	AF5	C	284	289	Right-handed alpha
Helix 51	AF6	C	290	293	Right-handed 310
Helix 52	AF7	C	297	301	Right-handed 310
Helix 53	AF8	C	302	317	Right-handed alpha
Helix 54	AF9	D	15	28	Right-handed alpha
Helix 55	AG1	D	77	88	Right-handed alpha
Helix 56	AG2	D	89	91	Right-handed 310
Helix 57	AG3	D	92	96	Right-handed alpha
Helix 58	AG4	D	107	117	Right-handed alpha
Helix 59	AG5	D	117	123	Right-handed alpha
Helix 60	AG6	D	130	140	Right-handed alpha
Helix 61	AG7	D	145	154	Right-handed 310
Helix 62	AG8	D	158	169	Right-handed alpha
Helix 63	AG9	D	180	184	Right-handed 310
Helix 64	AH1	D	199	208	Right-handed alpha
Helix 65	AH2	D	210	214	Right-handed 310
Helix 66	AH3	D	238	246	Right-handed alpha
Helix 67	AH4	D	264	275	Right-handed alpha
Helix 68	AH5	D	284	289	Right-handed alpha
Helix 69	AH6	D	290	293	Right-handed 310
Helix 70	AH7	D	302	316	Right-handed alpha
Helix 71	AH8	E	15	28	Right-handed alpha
Helix 72	AH9	E	77	88	Right-handed alpha
Helix 73	AI1	E	89	91	Right-handed 310
Helix 74	AI2	E	92	96	Right-handed alpha
Helix 75	AI3	E	107	117	Right-handed alpha
Helix 76	AI4	E	117	123	Right-handed alpha
Helix 77	AI5	E	130	140	Right-handed alpha
Helix 78	AI6	E	145	154	Right-handed 310
Helix 79	AI7	E	158	169	Right-handed alpha
Helix 80	AI8	E	180	184	Right-handed 310
Helix 81	AI9	E	199	208	Right-handed alpha
Helix 82	AJ1	E	210	214	Right-handed 310
Helix 83	AJ2	E	238	245	Right-handed alpha
Helix 84	AJ3	E	264	275	Right-handed alpha
Helix 85	AJ4	E	284	289	Right-handed alpha
Helix 86	AJ5	E	290	293	Right-handed 310
Helix 87	AJ6	E	302	316	Right-handed alpha
Helix 88	AJ7	F	15	28	Right-handed alpha
Helix 89	AJ8	F	77	88	Right-handed alpha
Helix 90	AJ9	F	89	92	Right-handed 310
Helix 91	AK1	F	107	117	Right-handed alpha
Helix 92	AK2	F	117	122	Right-handed alpha
Helix 93	AK3	F	130	140	Right-handed alpha
Helix 94	AK4	F	145	154	Right-handed 310
Helix 95	AK5	F	158	169	Right-handed alpha
Helix 96	AK6	F	180	184	Right-handed 310
Helix 97	AK7	F	199	208	Right-handed alpha
Helix 98	AK8	F	210	214	Right-handed 310
Helix 99	AK9	F	238	245	Right-handed alpha
Helix 100	AL1	F	264	275	Right-handed alpha
Helix 101	AL2	F	284	289	Right-handed alpha
Helix 102	AL3	F	290	293	Right-handed 310
Helix 103	AL4	F	297	301	Right-handed 310
Helix 104	AL5	F	302	317	Right-handed alpha

There are 26 sheets in PDB entry 5K7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	97	100	parallel
Strand 3	A	67	70	parallel
Strand 4	A	31	34	parallel
Strand 5	A	173	176	parallel
Strand 6	A	3	8	parallel
Strand 7	A	216	222	parallel
Strand 8	A	279	283	parallel
Strand 9	A	320	324	parallel
Strand 10	A	332	334	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	50	54	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	259	260	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	3	8	parallel
Strand 3	B	216	222	parallel
Strand 4	B	279	283	parallel
Strand 5	B	320	324	parallel
Strand 6	B	332	334	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	50	54	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	97	100	parallel
Strand 3	B	156	157	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	104	105	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	259	260	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	173	176	parallel
Strand 3	C	3	8	parallel
Strand 4	C	216	222	parallel
Strand 5	C	279	283	parallel
Strand 6	C	320	324	parallel
Strand 7	C	332	334	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	50	54	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	70	first strand
Strand 2	C	97	100	parallel
Strand 3	C	156	157	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	104	105	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	259	260	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	173	176	parallel
Strand 3	D	3	8	parallel
Strand 4	D	216	222	parallel
Strand 5	D	279	283	parallel
Strand 6	D	320	324	parallel
Strand 7	D	332	334	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	50	54	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	70	first strand
Strand 2	D	97	100	parallel
Strand 3	D	156	157	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	104	105	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	259	260	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	157	first strand
Strand 2	E	97	100	parallel
Strand 3	E	67	70	parallel
Strand 4	E	31	34	parallel
Strand 5	E	173	176	parallel
Strand 6	E	3	8	parallel
Strand 7	E	216	222	parallel
Strand 8	E	279	283	parallel
Strand 9	E	320	324	parallel
Strand 10	E	332	334	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	50	54	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	104	105	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	259	260	anti-parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	157	first strand
Strand 2	F	97	100	parallel
Strand 3	F	67	70	parallel
Strand 4	F	31	34	parallel
Strand 5	F	173	176	parallel
Strand 6	F	3	8	parallel
Strand 7	F	216	222	parallel
Strand 8	F	279	283	parallel
Strand 9	F	320	324	parallel
Strand 10	F	332	333	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	47	first strand
Strand 2	F	50	54	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	104	105	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	259	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K7X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K7X