Analysis of interatomic Contacts of Structural Units in PDB entry:
5K87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K87 entry

There are 2 chains in PDB entry 5K87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5PRO 397
B
 LEU 5PRO 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5K87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 32Right-handed 310
Helix 2
AA2
A
33 38Right-handed 310
Helix 3
AA3
A
40 52Right-handed alpha
Helix 4
AA4
A
68 71Right-handed 310
Helix 5
AA5
A
110 121Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
230 233Right-handed 310
Helix 8
AA8
A
239 244Right-handed alpha
Helix 9
AA9
A
246 264Right-handed alpha
Helix 10
AB1
A
269 275Right-handed 310
Helix 11
AB2
A
300 304Right-handed 310
Helix 12
AB3
A
321 333Right-handed alpha
Helix 13
AB4
A
337 343Right-handed alpha
Helix 14
AB5
B
30 32Right-handed 310
Helix 15
AB6
B
33 38Right-handed 310
Helix 16
AB7
B
40 52Right-handed alpha
Helix 17
AB8
B
68 71Right-handed 310
Helix 18
AB9
B
110 121Right-handed alpha
Helix 19
AC1
B
125 129Right-handed 310
Helix 20
AC2
B
230 233Right-handed 310
Helix 21
AC3
B
239 243Right-handed 310
Helix 22
AC4
B
246 264Right-handed alpha
Helix 23
AC5
B
269 274Right-handed 310
Helix 24
AC6
B
300 304Right-handed 310
Helix 25
AC7
B
321 334Right-handed alpha
Helix 26
AC8
B
337 343Right-handed alpha
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There are 8 sheets in PDB entry 5K87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 32 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
211 219anti-parallel
Strand 3
B
223 228anti-parallel
Strand 4
B
281 286parallel
Strand 5
B
306 312anti-parallel
Strand 6
B
350 355parallel
Strand 7
B
358 369anti-parallel
Strand 8
B
372 382anti-parallel
Strand 9
B
177 182anti-parallel
Strand 10
B
146 155anti-parallel
Strand 11
B
133 141anti-parallel
Strand 12
B
87 94parallel
Strand 13
B
73 79anti-parallel
Strand 14
B
22 28parallel
Strand 15
B
10 19anti-parallel
Strand 16
B
384 394anti-parallel
Strand 17
A
384 394anti-parallel
Strand 18
A
10 19anti-parallel
Strand 19
A
22 28anti-parallel
Strand 20
A
73 79parallel
Strand 21
A
87 94anti-parallel
Strand 22
A
133 141parallel
Strand 23
A
146 155anti-parallel
Strand 24
A
177 182anti-parallel
Strand 25
A
372 382anti-parallel
Strand 26
A
358 369anti-parallel
Strand 27
A
350 355anti-parallel
Strand 28
A
306 312parallel
Strand 29
A
281 286anti-parallel
Strand 30
A
223 228parallel
Strand 31
A
211 219anti-parallel
Strand 32
A
203 207anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
211 219anti-parallel
Strand 3
B
223 228anti-parallel
Strand 4
B
281 286parallel
Strand 5
B
306 312anti-parallel
Strand 6
B
315 316anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
146 155anti-parallel
Strand 3
B
133 141anti-parallel
Strand 4
B
87 94parallel
Strand 5
B
101 102anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
87 94anti-parallel
Strand 3
A
133 141parallel
Strand 4
A
146 155anti-parallel
Strand 5
A
158 159anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
384 394first strand
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
223 228anti-parallel
Strand 4
A
281 286parallel
Strand 5
A
306 312anti-parallel
Strand 6
A
315 316anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
298 299anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
298 299anti-parallel
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