Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K8D entry

There are 2 chains in PDB entry 5K8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLY 716
B	LYS 1694	TYR 2332

There are 17 helices in PDB entry 5K8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	70	Right-handed 310
Helix 2	AA2	A	183	190	Right-handed alpha
Helix 3	AA3	A	408	413	Right-handed alpha
Helix 4	AA4	A	540	546	Right-handed alpha
Helix 5	AA5	A	587	595	Right-handed alpha
Helix 6	AA6	A	605	610	Right-handed alpha
Helix 7	AA7	A	611	613	Right-handed 310
Helix 8	AA8	A	696	703	Right-handed alpha
Helix 9	AA9	B	1750	1757	Right-handed 310
Helix 10	AB1	B	1820	1824	Right-handed 310
Helix 11	AB2	B	1844	1850	Right-handed alpha
Helix 12	AB3	B	1890	1896	Right-handed alpha
Helix 13	AB4	B	1912	1917	Right-handed alpha
Helix 14	AB5	B	2002	2008	Right-handed alpha
Helix 15	AB6	B	2033	2035	Right-handed 310
Helix 16	AB7	B	2179	2183	Right-handed 310
Helix 17	AB8	B	2204	2208	Right-handed 310

There are 25 sheets in PDB entry 5K8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	84	86	parallel
Strand 3	A	136	138	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	46	49	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	174	179	parallel
Strand 3	A	154	158	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	253	260	parallel
Strand 4	A	293	298	anti-parallel
Strand 5	A	276	277	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	321	326	parallel
Strand 3	A	304	310	anti-parallel
Strand 4	A	267	271	anti-parallel
Strand 5	A	287	288	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	429	first strand
Strand 2	A	384	394	anti-parallel
Strand 3	A	462	466	parallel
Strand 4	A	508	514	anti-parallel
Strand 5	A	482	485	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	549	554	parallel
Strand 3	A	530	534	anti-parallel
Strand 4	A	476	478	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	576	first strand
Strand 2	A	635	641	parallel
Strand 3	A	676	682	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	653	first strand
Strand 2	A	691	692	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	665	666	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1730	1737	first strand
Strand 2	B	1696	1707	anti-parallel
Strand 3	B	1768	1778	parallel
Strand 4	B	1812	1819	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1763	1766	first strand
Strand 2	B	1853	1858	parallel
Strand 3	B	1836	1838	anti-parallel
Strand 4	B	1786	1787	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1874	1877	first strand
Strand 2	B	1940	1943	parallel
Strand 3	B	1985	1988	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1880	1883	first strand
Strand 2	B	1918	1921	anti-parallel
Strand 3	B	1924	1925	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1975	1977	first strand
Strand 2	B	1955	1958	anti-parallel
Strand 3	B	1994	2000	anti-parallel
Strand 4	B	2011	2016	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1963	1966	first strand
Strand 2	B	1970	1973	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2023	2024	first strand
Strand 2	B	2167	2168	anti-parallel
Strand 3	B	2081	2083	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2037	2038	first strand
Strand 2	B	2072	2074	anti-parallel
Strand 3	B	2148	2156	anti-parallel
Strand 4	B	2098	2106	anti-parallel
Strand 5	B	2113	2114	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2037	2038	first strand
Strand 2	B	2072	2074	anti-parallel
Strand 3	B	2148	2156	anti-parallel
Strand 4	B	2098	2106	anti-parallel
Strand 5	B	2126	2127	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2136	2137	first strand
Strand 2	B	2085	2087	anti-parallel
Strand 3	B	2163	2164	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2089	2090	first strand
Strand 2	B	2095	2096	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2190	2192	first strand
Strand 2	B	2230	2233	anti-parallel
Strand 3	B	2305	2310	anti-parallel
Strand 4	B	2259	2262	anti-parallel
Strand 5	B	2283	2284	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2238	2239	first strand
Strand 2	B	2326	2327	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2293	2295	first strand
Strand 2	B	2243	2245	anti-parallel
Strand 3	B	2321	2323	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2247	2249	first strand
Strand 2	B	2254	2257	anti-parallel
Strand 3	B	2313	2314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8D