Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K8E entry

There is 1 chain in PDB entry 5K8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25VAL 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5K8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 34Right-handed alpha
Helix 2
AA2
A
43 50Right-handed alpha
Helix 3
AA3
A
69 84Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
134 147Right-handed alpha
Helix 6
AA6
A
159 166Right-handed alpha
Helix 7
AA7
A
172 177Right-handed alpha
Helix 8
AA8
A
178 181Right-handed 310
Helix 9
AA9
A
203 214Right-handed alpha
Helix 10
AB1
A
215 217Right-handed 310
Helix 11
AB2
A
245 262Right-handed alpha
Helix 12
AB3
A
289 305Right-handed alpha
Helix 13
AB4
A
315 325Right-handed alpha
Helix 14
AB5
A
353 367Right-handed alpha
Helix 15
AB6
A
368 371Right-handed 310
Helix 16
AB7
A
426 438Right-handed alpha
Helix 17
AB8
A
439 440Right-handed 310
Helix 18
AB9
A
441 443Right-handed 310
Helix 19
AC1
A
448 452Right-handed 310
Helix 20
AC2
A
457 467Right-handed alpha
Helix 21
AC3
A
469 481Right-handed alpha
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There are 4 sheets in PDB entry 5K8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
108 111parallel
Strand 3
A
87 90parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
127 129anti-parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
183 189anti-parallel
Strand 5
A
195 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
228 229anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 314first strand
Strand 2
A
234 240anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
269 276anti-parallel
Strand 5
A
374 381anti-parallel
Strand 6
A
409 417anti-parallel
Strand 7
A
341 349anti-parallel
Strand 8
A
445 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il