Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K8F entry

There are 2 chains in PDB entry 5K8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	THR 681
B	HIS 11	GLU 674

There are 80 helices in PDB entry 5K8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	25	Right-handed 310
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	47	56	Right-handed alpha
Helix 4	AA4	A	63	75	Right-handed alpha
Helix 5	AA5	A	103	109	Right-handed alpha
Helix 6	AA6	A	109	116	Right-handed alpha
Helix 7	AA7	A	128	132	Right-handed 310
Helix 8	AA8	A	137	154	Right-handed alpha
Helix 9	AA9	A	170	183	Right-handed alpha
Helix 10	AB1	A	194	206	Right-handed alpha
Helix 11	AB2	A	224	234	Right-handed alpha
Helix 12	AB3	A	262	267	Right-handed alpha
Helix 13	AB4	A	303	318	Right-handed alpha
Helix 14	AB5	A	334	341	Right-handed alpha
Helix 15	AB6	A	342	348	Right-handed alpha
Helix 16	AB7	A	365	375	Right-handed alpha
Helix 17	AB8	A	382	392	Right-handed alpha
Helix 18	AB9	A	393	397	Right-handed 310
Helix 19	AC1	A	416	427	Right-handed alpha
Helix 20	AC2	A	507	516	Right-handed alpha
Helix 21	AC3	A	555	564	Right-handed alpha
Helix 22	AC4	A	602	618	Right-handed alpha
Helix 23	AC5	A	619	623	Right-handed 310
Helix 24	AC6	A	642	650	Right-handed alpha
Helix 25	AC7	A	671	680	Right-handed alpha
Helix 26	AC8	B	21	25	Right-handed 310
Helix 27	AC9	B	30	34	Right-handed 310
Helix 28	AD1	B	47	56	Right-handed alpha
Helix 29	AD2	B	63	75	Right-handed alpha
Helix 30	AD3	B	103	109	Right-handed alpha
Helix 31	AD4	B	109	116	Right-handed alpha
Helix 32	AD5	B	128	132	Right-handed 310
Helix 33	AD6	B	137	154	Right-handed alpha
Helix 34	AD7	B	170	183	Right-handed alpha
Helix 35	AD8	B	194	206	Right-handed alpha
Helix 36	AD9	B	224	234	Right-handed alpha
Helix 37	AE1	B	262	267	Right-handed alpha
Helix 38	AE2	B	303	318	Right-handed alpha
Helix 39	AE3	B	334	341	Right-handed alpha
Helix 40	AE4	B	342	348	Right-handed alpha
Helix 41	AE5	B	365	375	Right-handed alpha
Helix 42	AE6	B	382	393	Right-handed alpha
Helix 43	AE7	B	394	399	Right-handed alpha
Helix 44	AE8	B	416	427	Right-handed alpha
Helix 45	AE9	B	440	444	Right-handed 310
Helix 46	AF1	B	507	516	Right-handed alpha
Helix 47	AF2	B	544	546	Right-handed 310
Helix 48	AF3	B	555	565	Right-handed alpha
Helix 49	AF4	B	602	618	Right-handed alpha
Helix 50	AF5	B	619	623	Right-handed 310
Helix 51	AF6	B	642	651	Right-handed alpha
Helix 52	AF7	B	671	680	Right-handed alpha
Helix 53	AF8	C	21	25	Right-handed 310
Helix 54	AF9	C	30	35	Right-handed 310
Helix 55	AG1	C	47	56	Right-handed alpha
Helix 56	AG2	C	57	59	Right-handed 310
Helix 57	AG3	C	63	75	Right-handed alpha
Helix 58	AG4	C	103	109	Right-handed alpha
Helix 59	AG5	C	109	116	Right-handed alpha
Helix 60	AG6	C	128	132	Right-handed 310
Helix 61	AG7	C	137	154	Right-handed alpha
Helix 62	AG8	C	170	183	Right-handed alpha
Helix 63	AG9	C	194	206	Right-handed alpha
Helix 64	AH1	C	224	234	Right-handed alpha
Helix 65	AH2	C	262	268	Right-handed alpha
Helix 66	AH3	C	303	318	Right-handed alpha
Helix 67	AH4	C	334	341	Right-handed alpha
Helix 68	AH5	C	342	348	Right-handed alpha
Helix 69	AH6	C	365	375	Right-handed alpha
Helix 70	AH7	C	382	392	Right-handed alpha
Helix 71	AH8	C	394	399	Right-handed alpha
Helix 72	AH9	C	416	427	Right-handed alpha
Helix 73	AI1	C	440	444	Right-handed 310
Helix 74	AI2	C	507	516	Right-handed alpha
Helix 75	AI3	C	544	546	Right-handed 310
Helix 76	AI4	C	555	565	Right-handed alpha
Helix 77	AI5	C	602	618	Right-handed alpha
Helix 78	AI6	C	619	623	Right-handed 310
Helix 79	AI7	C	642	651	Right-handed alpha
Helix 80	AI8	C	671	681	Right-handed alpha

There are 24 sheets in PDB entry 5K8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	95	96	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	278	279	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	351	355	parallel
Strand 4	A	325	328	parallel
Strand 5	A	378	381	parallel
Strand 6	A	407	410	parallel
Strand 7	A	433	436	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	241	245	parallel
Strand 3	A	209	213	parallel
Strand 4	A	161	165	parallel
Strand 5	A	185	188	parallel
Strand 6	A	283	288	parallel
Strand 7	A	298	302	anti-parallel
Strand 8	A	503	504	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	221	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	523	531	anti-parallel
Strand 4	A	537	542	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	549	first strand
Strand 2	A	552	554	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	579	first strand
Strand 2	A	583	592	anti-parallel
Strand 3	A	626	629	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	95	96	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	278	279	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	120	125	anti-parallel
Strand 3	B	351	355	parallel
Strand 4	B	325	328	parallel
Strand 5	B	378	381	parallel
Strand 6	B	407	410	parallel
Strand 7	B	433	436	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	241	245	parallel
Strand 3	B	209	213	parallel
Strand 4	B	161	165	parallel
Strand 5	B	185	188	parallel
Strand 6	B	285	288	parallel
Strand 7	B	298	301	anti-parallel
Strand 8	B	503	504	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	221	223	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	474	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	523	531	anti-parallel
Strand 4	B	537	542	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	549	first strand
Strand 2	B	552	554	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	578	first strand
Strand 2	B	584	592	anti-parallel
Strand 3	B	626	629	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	95	96	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	278	279	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	351	355	parallel
Strand 4	C	325	328	parallel
Strand 5	C	378	381	parallel
Strand 6	C	407	410	parallel
Strand 7	C	433	436	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	241	245	parallel
Strand 3	C	209	213	parallel
Strand 4	C	161	165	parallel
Strand 5	C	185	188	parallel
Strand 6	C	283	288	parallel
Strand 7	C	298	302	anti-parallel
Strand 8	C	503	504	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	221	223	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	482	first strand
Strand 2	C	471	474	anti-parallel
Strand 3	C	487	493	anti-parallel
Strand 4	C	523	531	anti-parallel
Strand 5	C	537	542	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	547	549	first strand
Strand 2	C	552	554	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	579	first strand
Strand 2	C	583	592	anti-parallel
Strand 3	C	626	629	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8F