Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K8G entry

There is 1 chain in PDB entry 5K8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASP 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5K8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 25Right-handed 310
Helix 2
AA2
A
59 61Right-handed 310
Helix 3
AA3
A
71 77Right-handed alpha
Helix 4
AA4
A
267 272Right-handed alpha
Helix 5
AA5
A
336 341Right-handed alpha
Helix 6
AA6
A
472 476Right-handed 310
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There are 10 sheets in PDB entry 5K8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
27 35anti-parallel
Strand 3
A
63 70anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
103 104parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
93 101anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 115first strand
Strand 2
A
182 190parallel
Strand 3
A
170 176anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
154 157anti-parallel
Strand 3
A
145 148anti-parallel
Strand 4
A
137 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 206first strand
Strand 2
A
495 507parallel
Strand 3
A
481 489anti-parallel
Strand 4
A
430 436anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 224first strand
Strand 2
A
299 311anti-parallel
Strand 3
A
209 212anti-parallel
Strand 4
A
274 276anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 224first strand
Strand 2
A
299 311anti-parallel
Strand 3
A
317 329anti-parallel
Strand 4
A
342 346anti-parallel
Strand 5
A
380 383anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
248 251anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
281 290anti-parallel
Strand 5
A
387 399anti-parallel
Strand 6
A
358 369anti-parallel
Strand 7
A
350 355anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 411first strand
Strand 2
A
464 469anti-parallel
Strand 3
A
455 459anti-parallel
Strand 4
A
449 451anti-parallel
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